Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2041 |
Symbol | rnfD |
ID | 5614006 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2470393 |
End bp | 2471445 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932927 |
Product | electron transport complex protein RnfD |
Protein accession | YP_001473778 |
Protein GI | 157375178 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.460383 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTTA AGATTGCCTC TTCGCCTCAT TTGAGTCGTA GTTTTCAGAC CAGCTCTTTA ATGCAGCGTG TCATCTTATG TGCCCTACCC GGTGTCGCGG TGCAGTGTTT CTTTTTTGGC TGGGGTACTG TTATACAAGC CCTGCTCGCC ATGAGCGTTG CATTATTAAG TGAAGCAGTT GTACTTAAAC TCAGAGCACG CAACGTCACT GATACACTCA GAGATAACAG CGCGCTACTA ACAGGATTGC TCATAGGTAT CGCAATTCCC CCCCTCGCAC CTTGGTGGGT AACTGTGATA GGAACCCTGT TTGCGATAGT GATAGTCAAA CAACTTTACG GCGGTCTTGG GCATAATATT TTTAACCCTG CCATGGCGGC CTATGTCATG TTACTGATCT CATTTCCTGT ACAGATGACG AGTTGGGTTG CCCCCTCAGT GATAGCGAGT CAGCCGGTAG ACTTTATTCA TAGTCTACAG ATGATTTTCA CCGGCGCCTC TTCGTCTGAG ATCAATGCCT ATAAACTCGG GTTTGATGGC ATATCGATGG CAACCCCACT CGATACCATC AAAACGGATT TGGCCATGGG TCTGACTACA ACCGAGAGTC TTTCAAAAGC TATCTTTTCA GATGGATTTG GTGTGGGTTG GTTTTGGGTC AACCTGGCAT ATCTTGCCGG TGGCTTAGTC ATGTTGAAAC TCAAGGTCAT TCGTTGGCAT ATCACTGCCG GCATATTAGC TGCCCTGTTT ATCTGTTCCG GTGTTGGCTA CCTGCTTAAC CCCGATACAT TTACTGGTCC CCTGTTGCAT CTGTTTTCTG GTGCAACCAT GTTGGCAGCC TTCTTCATTG CTACCGATCC TGTAACGGCG GCAACCAGCG TAAGAGGACG CTTAGTCTTT GGCGCCTTGA TCGGTATCCT GGTTTATATC ATTCGAACGT TTGGTGGCTA TCCGGATGCC TTTGCATTTG CCATTTTATT AGCCAACCTC TGTGCTCCTT TTATCGATCA TTACATGAAA CCTAGGGCCT ACGGCCATAG ATCAGCGACT TAA
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Protein sequence | MAFKIASSPH LSRSFQTSSL MQRVILCALP GVAVQCFFFG WGTVIQALLA MSVALLSEAV VLKLRARNVT DTLRDNSALL TGLLIGIAIP PLAPWWVTVI GTLFAIVIVK QLYGGLGHNI FNPAMAAYVM LLISFPVQMT SWVAPSVIAS QPVDFIHSLQ MIFTGASSSE INAYKLGFDG ISMATPLDTI KTDLAMGLTT TESLSKAIFS DGFGVGWFWV NLAYLAGGLV MLKLKVIRWH ITAGILAALF ICSGVGYLLN PDTFTGPLLH LFSGATMLAA FFIATDPVTA ATSVRGRLVF GALIGILVYI IRTFGGYPDA FAFAILLANL CAPFIDHYMK PRAYGHRSAT
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