Gene Ssed_2041 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2041 
SymbolrnfD 
ID5614006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2470393 
End bp2471445 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content48% 
IMG OID640932927 
Productelectron transport complex protein RnfD 
Protein accessionYP_001473778 
Protein GI157375178 
COG category[C] Energy production and conversion 
COG ID[COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 
TIGRFAM ID[TIGR01946] electron transport complex, RnfABCDGE type, D subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.460383 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTTA AGATTGCCTC TTCGCCTCAT TTGAGTCGTA GTTTTCAGAC CAGCTCTTTA 
ATGCAGCGTG TCATCTTATG TGCCCTACCC GGTGTCGCGG TGCAGTGTTT CTTTTTTGGC
TGGGGTACTG TTATACAAGC CCTGCTCGCC ATGAGCGTTG CATTATTAAG TGAAGCAGTT
GTACTTAAAC TCAGAGCACG CAACGTCACT GATACACTCA GAGATAACAG CGCGCTACTA
ACAGGATTGC TCATAGGTAT CGCAATTCCC CCCCTCGCAC CTTGGTGGGT AACTGTGATA
GGAACCCTGT TTGCGATAGT GATAGTCAAA CAACTTTACG GCGGTCTTGG GCATAATATT
TTTAACCCTG CCATGGCGGC CTATGTCATG TTACTGATCT CATTTCCTGT ACAGATGACG
AGTTGGGTTG CCCCCTCAGT GATAGCGAGT CAGCCGGTAG ACTTTATTCA TAGTCTACAG
ATGATTTTCA CCGGCGCCTC TTCGTCTGAG ATCAATGCCT ATAAACTCGG GTTTGATGGC
ATATCGATGG CAACCCCACT CGATACCATC AAAACGGATT TGGCCATGGG TCTGACTACA
ACCGAGAGTC TTTCAAAAGC TATCTTTTCA GATGGATTTG GTGTGGGTTG GTTTTGGGTC
AACCTGGCAT ATCTTGCCGG TGGCTTAGTC ATGTTGAAAC TCAAGGTCAT TCGTTGGCAT
ATCACTGCCG GCATATTAGC TGCCCTGTTT ATCTGTTCCG GTGTTGGCTA CCTGCTTAAC
CCCGATACAT TTACTGGTCC CCTGTTGCAT CTGTTTTCTG GTGCAACCAT GTTGGCAGCC
TTCTTCATTG CTACCGATCC TGTAACGGCG GCAACCAGCG TAAGAGGACG CTTAGTCTTT
GGCGCCTTGA TCGGTATCCT GGTTTATATC ATTCGAACGT TTGGTGGCTA TCCGGATGCC
TTTGCATTTG CCATTTTATT AGCCAACCTC TGTGCTCCTT TTATCGATCA TTACATGAAA
CCTAGGGCCT ACGGCCATAG ATCAGCGACT TAA
 
Protein sequence
MAFKIASSPH LSRSFQTSSL MQRVILCALP GVAVQCFFFG WGTVIQALLA MSVALLSEAV 
VLKLRARNVT DTLRDNSALL TGLLIGIAIP PLAPWWVTVI GTLFAIVIVK QLYGGLGHNI
FNPAMAAYVM LLISFPVQMT SWVAPSVIAS QPVDFIHSLQ MIFTGASSSE INAYKLGFDG
ISMATPLDTI KTDLAMGLTT TESLSKAIFS DGFGVGWFWV NLAYLAGGLV MLKLKVIRWH
ITAGILAALF ICSGVGYLLN PDTFTGPLLH LFSGATMLAA FFIATDPVTA ATSVRGRLVF
GALIGILVYI IRTFGGYPDA FAFAILLANL CAPFIDHYMK PRAYGHRSAT