| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2038 |
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| Symbol | |
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| ID | 5613773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2468359 |
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| End bp | 2468997 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932924 |
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| Product | DNA-(apurinic or apyrimidinic site) lyase |
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| Protein accession | YP_001473775 |
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| Protein GI | 157375175 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0177] Predicted EndoIII-related endonuclease |
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| TIGRFAM ID | [TIGR01083] endonuclease III |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACAAGT CTAAACGAAT ACAGATCCTT GAGATCTTAA GAGAGAATAA CCCTCACCCC
GAAACTGAGC TTAATTTCTC CAGTCCGTTT GAGTTGCTCG TTGCGGTCAC ACTCTCGGCT
CAGGCAACTG ACGTCAGTGT CAATAAAGCC ACCGATAAGC TATTCCCCGT TGCCAATACG
GCCCACGCCA TCCACGCTCT GGGTGTTGAT GGTCTAAAAG AGTATATAAA GACAATTGGT
CTTTATAACA ACAAGGCAAT TAATGTTATT AAGGCCTGTG AAATACTCAT CGAAAAGTTT
AATGGTGAAG TGCCGGAGGA TCGCGAAGCG CTCGAATCAC TACCGGGTGT AGGCAGAAAA
ACCGCCAATG TGGTACTCAA TACCGCATTT GGATGGCCTA CCATTGCCAT CGACACGCAT
ATTTTCCGAG TCGCTAACAG AACAAAATTT GCAATGGGCA AGAATGTTGT CGATGTCGAG
GATAAGATGC TGAAAGTGGT CCCCAGTGAG TTTATGGTCG ACGTACATCA CTGGTTCATC
CTTCACGGAC GCTACACCTG CATAGCAAGA AAGCCCCGCT GTGGCAGTTG CCTGATTGAA
GAACTTTGTG AATTCAAAGA CAAAGTCTAT CCTGAGTAA
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| Protein sequence | MNKSKRIQIL EILRENNPHP ETELNFSSPF ELLVAVTLSA QATDVSVNKA TDKLFPVANT
AHAIHALGVD GLKEYIKTIG LYNNKAINVI KACEILIEKF NGEVPEDREA LESLPGVGRK
TANVVLNTAF GWPTIAIDTH IFRVANRTKF AMGKNVVDVE DKMLKVVPSE FMVDVHHWFI
LHGRYTCIAR KPRCGSCLIE ELCEFKDKVY PE
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