| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2036 |
|---|
| Symbol | |
|---|
| ID | 5613771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2464419 |
|---|
| End bp | 2466944 |
|---|
| Gene Length | 2526 bp |
|---|
| Protein Length | 841 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932922 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001473773 |
|---|
| Protein GI | 157375173 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.519963 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGAA CATCGCAGCA TTCTCGTAGT AAATTAGCCT CAGCAATTAA ATTTGGTTTA
ATTGCTTCAG TATCAACCAC AGCATTTACC GTATCAACAA GTGCGGTGGC AGAAGAAGCT
AAAGTCGAAC GTATTGCAGT AACCGGCTCC CGTATTCAAC GACAAGATAT GGAAACAGCA
TCTCCTGTAA CAGTGATTGA TGCTGCGACT ATCAAAGCTG AAGGTTTCAC TTCAGTAGAC
CAAATGCTAC AAGCACAAAC TTCTATGGCT GGTGCCGCAA TGGGTTCAAG CACCAACAAT
GGCTCAGACG GTGTTGCTCA GGTTGACCTT CGTGGTATGG GCTCGCAGCG TACGCTGGTA
TTGTTAAATG GTCGCCGCAT GGTGAACTCA GGTTCTGGTG CTGACAGCGC TGTGGATCTG
AACTCTATTC CTGTCGCTAT GATTGCACGT GTCGAGATCC TTAAAGACGG CGCTTCAGCG
GTATATGGTT CAGACGCCAT TGCCGGTGTT GTAAACATTA TCACTAAGAA AGATTTTGAA
GGCTTCCAGA TTGATGTTAC TGGTGGCATG ACTGATAAGA GCGACGGTGA AAACGGCGAA
ATCAGTGCCC TTTACGGTTT TAATACTGAT ACGGGTAACT ACACATTCGG TGCGGCTTAC
TCCGAGCGTC GTGGTGTGGT TCAGTCTGAC CGTGACTGGA CAGATCCTGG TGCCAGCTCA
TTCATTCCAA ACGGGTCATT GGGCGGAATG GTTAAAGATG AGAATGGTAA CTGGGTTGAC
CGTGAAGAAG GCTACGATTA TACACAAGAC AGCTTTTATC AAACGCCGAG TAAGCGTTAT
AGCTTGTTCG CTAACATGAC GCAAGAACTT GGCGATGATC TGGTGCTAAC GGGTGATATC
CTTTACACCA AGCGTAAGTC AAACCAGCAG TTGGCGCCAC AACCAGCTAA TCTCGACCTT
GATGTTTGTG AAGCAGGTGA CGATCCTACT AAGTGTGTAG AGCTTGACCA AGATATGATC
GATGCAGGCA TCACGCCAAA CGACAAAGGC CAAGTTAACT ACAGAAAACG CATGAGTGAC
GTTGGTCCTC GTATCTATAC TCAGGACACT GATACATTAC GCGTCTCTGC AGGTCTAGCA
GGTTCAATTG ATGTTAATAC CGGTATGGAT TGGGATCTTG CGTACACTTA CGGTAAAAAC
AAAGCTAAAA CAGCGGTAGA AAACTCAATC AATGCATCAA TCATGACGGA TGCAATCTAT
GCAGATCAAG ATCCTTGGTT GACAGGTCAG CCGATGACAG ACCAGGATTT GCTGAACAGT
GTTGCTTACA CTGAAGAAGC TGATGGTGGT AATGAGCAAC ATGTATTCTC TGCGGGTCTA
ACGGGTGAGT TATTTGACCT TGATGCCGGT GCTGTGGCAT ATGCAATCGG TGCTGAATAC
CGTTACGAAA GCGGTTACTA CAACCCAGAC CCTATTGTGG TTGCGGGTGA AAGTACTGCT
GCACAGCAAG ATCCAACAGA TGGTAACTAC AATGTAATTT CTGTATTCCA GGAAGTCAGC
GTGCCATTTA CGGATAAGCT GACCGGTGAA TTCGCACTTC GTTTTGACGA TTACTCAACA
TTTGGTAATG CGTCAACCTG GAAAATTGGT CTAACATACG AAGCGACAGA TGATTTGATG
ATCCGCACCG TAGCAGCGAC GGGCTTCCGT GCTCCTAGCG TTAGCGAGCT ATACGGCGGA
AACTCAGGTT CATTCGATTA CCTGGATGAT CCATGGGGTA ATGAGCAAGA CCCACAGATC
TTAGTGATTC GTACCTCTGA TGAAGATCTT AAACCTGAAG AGTCTGAGTC ATATACTGCG
GGCTTAGTGT ATTCGCCTAG CTATGTGGAT GGCATGTCGT TAACTGTAGA TTACTGGCGC
TTTAAAGTTA AAAACGCGAT TGCTCGCATG GATACACAAA ATGGCCTAAA CAACTGTTTT
GCAGGTGATC AGGCGGCATG TGAAGCGTTC AACATTGGAC CAAACGGCGA TCTAGATAAC
CTAACAAACT CGCTAACTAA CGTAGGCTAC CAAGATACAA GCGGTATCGA TTTTAACTTA
GCCTATAGCT TTGAAGCGTT GAGCTTAGAT TGGACAATAA GCAATGATAC CACCTATTTG
CTGAACTTTG AGCAAGATGG CGTTGATTAC ACAAATACCA TCGATGGTAA TTTCGGTGCT
TATGCTCAAG TTCGTAACAA CTTCAGCATT AAAGCGGGTC AAGATGATTG GAGCGTCATG
TACTTCAACC GTTATATTGG TGAAATGGAT GACTTAGGTG AAGGTACTAA GGTTGATGCT
ATTCTATATC ACAACGTATC AGCATCTTAT TACTTCAATG ATACTTGGAT GGTGAGTGCG
GGCGTTAAGA ACCTGACTGA CGAAGAGCCA TCAAATGTGT CTAACGGTAG TGCCGGTGGT
ACTGTACCAG AAGTGTATGA CACCATTGGT CGCCAATATT ACGCTGGCGT AACCGTCAAG
TTCTAG
|
|---|
| Protein sequence | MIRTSQHSRS KLASAIKFGL IASVSTTAFT VSTSAVAEEA KVERIAVTGS RIQRQDMETA
SPVTVIDAAT IKAEGFTSVD QMLQAQTSMA GAAMGSSTNN GSDGVAQVDL RGMGSQRTLV
LLNGRRMVNS GSGADSAVDL NSIPVAMIAR VEILKDGASA VYGSDAIAGV VNIITKKDFE
GFQIDVTGGM TDKSDGENGE ISALYGFNTD TGNYTFGAAY SERRGVVQSD RDWTDPGASS
FIPNGSLGGM VKDENGNWVD REEGYDYTQD SFYQTPSKRY SLFANMTQEL GDDLVLTGDI
LYTKRKSNQQ LAPQPANLDL DVCEAGDDPT KCVELDQDMI DAGITPNDKG QVNYRKRMSD
VGPRIYTQDT DTLRVSAGLA GSIDVNTGMD WDLAYTYGKN KAKTAVENSI NASIMTDAIY
ADQDPWLTGQ PMTDQDLLNS VAYTEEADGG NEQHVFSAGL TGELFDLDAG AVAYAIGAEY
RYESGYYNPD PIVVAGESTA AQQDPTDGNY NVISVFQEVS VPFTDKLTGE FALRFDDYST
FGNASTWKIG LTYEATDDLM IRTVAATGFR APSVSELYGG NSGSFDYLDD PWGNEQDPQI
LVIRTSDEDL KPEESESYTA GLVYSPSYVD GMSLTVDYWR FKVKNAIARM DTQNGLNNCF
AGDQAACEAF NIGPNGDLDN LTNSLTNVGY QDTSGIDFNL AYSFEALSLD WTISNDTTYL
LNFEQDGVDY TNTIDGNFGA YAQVRNNFSI KAGQDDWSVM YFNRYIGEMD DLGEGTKVDA
ILYHNVSASY YFNDTWMVSA GVKNLTDEEP SNVSNGSAGG TVPEVYDTIG RQYYAGVTVK
F
|
|---|
| |