| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2034 |
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| Symbol | ruvB |
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| ID | 5614218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2461338 |
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| End bp | 2462354 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932920 |
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| Product | Holliday junction DNA helicase RuvB |
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| Protein accession | YP_001473771 |
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| Protein GI | 157375171 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2255] Holliday junction resolvasome, helicase subunit |
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| TIGRFAM ID | [TIGR00635] Holliday junction DNA helicase, RuvB subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0438556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATAGAAG CCGATCGTTT AATCCATGCT GAGCCTCAAG GGCCCGAAGA GCGTGATGAG
CAGATAGACA GGGCGATGCG CCCTAAGTTG CTCGATGAGT ATACGGGTCA AGATGATACC
AGAGCTCAGT TAAAGATATT TATTAAAGCG GCGCAAAATC GCGGTGAGGC TCTCGATCAT
ATGCTGATCT ATGGCCCTCC GGGGCTTGGA AAGACTACAT TGGCGATGAT TGTCGCCAAT
GAGATGGGGG TAAATATTAA ATCTACCTCG GGACCTGTGC TGGAAAAAGC CGGCGATCTT
GCTGCACTCC TGACTAATCT TGAGCCTGGT GATGTCCTGT TTATCGATGA GATCCACCGC
CTTAGTTCGG TAGTCGAGGA GATCCTTTAT CCGGCTATGG AGGATTACCA ACTAGATATC
ATGATTGGTG AAGGCCCGGC AGCTCGTTCA ATCAAATTGG ATCTGCCTCC CTTTACGCTT
ATTGGCGCTA CTACGAGAGC TGGGGCGTTA ACTTCGCCAC TGCGCGCAAG ATTTGGTATT
CCTCTCAGGT TAGAGTTTTA TAACACGAAA GATCTCAGTT CAATTGTATC GCGTTCGGCT
AATGTCCTCG AGTTGCCCAT CGATGATGAA GGTGCAATAG AGCTGGCCAA GCGCTCTCGT
GGAACGCCGC GGATCGCCAA TCGTTTGTTA CGACGAGTAC GAGATTTTGC TGAGGTAAAG
CACGATGGCG AAATCAATAA AGCTGTGGCA GATCTGGCAT TAGATATGTT GGATATCGAT
TCCGAAGGTT TCGACTATAT GGATAGGAAG CTATTGCTGG CCATCATAGA TAAGTTTATG
GGGGGACCCG TAGGCCTCGA TAACTTAGCC GCTGCGATTG GCGAAGAGAG AGAGACCATC
GAAGATGTGT TAGAGCCCTT TTTGATCCAA CAGGGATTTA TCCAACGTAC ACCAAGAGGG
CGTATTGCCA CAGACCGTGC TTACCGCCAT TTCGACATCA TTCAACCTGA AAAATAG
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| Protein sequence | MIEADRLIHA EPQGPEERDE QIDRAMRPKL LDEYTGQDDT RAQLKIFIKA AQNRGEALDH
MLIYGPPGLG KTTLAMIVAN EMGVNIKSTS GPVLEKAGDL AALLTNLEPG DVLFIDEIHR
LSSVVEEILY PAMEDYQLDI MIGEGPAARS IKLDLPPFTL IGATTRAGAL TSPLRARFGI
PLRLEFYNTK DLSSIVSRSA NVLELPIDDE GAIELAKRSR GTPRIANRLL RRVRDFAEVK
HDGEINKAVA DLALDMLDID SEGFDYMDRK LLLAIIDKFM GGPVGLDNLA AAIGEERETI
EDVLEPFLIQ QGFIQRTPRG RIATDRAYRH FDIIQPEK
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