| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2030 |
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| Symbol | aspS |
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| ID | 5613971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2457554 |
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| End bp | 2459341 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932916 |
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| Product | aspartyl-tRNA synthetase |
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| Protein accession | YP_001473767 |
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| Protein GI | 157375167 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0173] Aspartyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.019591 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAGTC AATATTGTGG AGACGTCAAT AAGTCTCACG TTGGACAAGA AGTGACCCTA
GTGGGTTGGG TAAATCGTAG TCGTGACTTA GGCGGCGTTG TCTTTCTCGA TCTTCGTGAT
AGAGAAGGTA TTGTTCAAGT AGTTTATGAT CCTGATTTAC CGGAAGTATT CGATGTCGCT
AGCACGCTGC GCAGTGAGTT TTGTGTACAA GTAACGGGTT TGGTCCGTGC ACGTCCTGAT
AGTCAAGTTA ATAAAGATAT GCGCACCGGT GAAATTGAAA TTCTAGGCAA GGGCCTGACA
ATTTTAAATA GCGCTGCTCC TTTGCCTATC AACATGGATA AGAACCAGCA CAACACCGAA
GAGCAGCGAT TGAAATATCG TTACCTGGAT CTACGTCGTC CCGAGATGGC AGATAGAATT
GTATTTCGTT CGAAAGTGAC CAGTGCCGTT CGCCGTTTCC TGGATGATAG TGGGTTCCTG
GACATCGAAA CGCCGATATT GACCAAGGCT ACCCCGGAAG GTGCTCGTGA CTACTTAGTT
CCGAGTCGCA CATACAAAGG GCAGTTCTTT GCACTTCCTC AGTCACCACA GCTGTTTAAG
CAACTTCTGA TGATGTCAGG ATTTGACCGT TATTATCAAA TCGTAAAATG CTTCCGAGAT
GAAGATCTGC GCGCCGATCG TCAACCTGAA TTTACTCAGA TTGATATCGA GACCTCTTTC
ATGAGCTCTG CCGAAGTGAT GGCTAAGACT GAAGAGATGA CTCGTGGTTT ATTTAAAGAT
CTGTTAAACG TCGATCTGGG CGAGTTTCCT AAGATGACCT TTGCCGAGGC GATGCGTCGT
TTTGGTTCTG ACAAACCGGA TCTGCGTAAC CCTCTCGAAC TGATTGATGT TGCCGATATC
CTGAAAGATG TCGAGTTTAA AGTCTTCCAG GAGCCGGCTA ACGATCCTGC AGGCCGAGTG
GCCGTTCTTT GTATCCCAGG TGGTGCAAAA CTGTCACGTA AACAGCTCGA TGAATATGCG
AAATATGCCA CTATCTACGG TGCTAAAGGT TTAGCATGGA TGAAGGTAAA TGATCTTGAT
AAGGGTCTGG AAGGCATTCA ATCTCCGGTA CTTAAGTTCC TGAACGAAGA TGTTGTTAAC
GGTTTGCTTG AGCGTACTAA CGCTAAAACT GGCGATCTGA TCTTGTTCGG TGCCGATAAA
GCGAACATTG TAGCCGAGGC TATGGGCGCA CTTCGTCTTA AAGCCGGTGA AGATTTTGAC
TTGCTCAATG GTGAGTGGAA ACCGCTATGG GTTGTAGACT TCCCAATGTT TGAACCTACA
TCTGATGGTG GATTGCATGC GATGCATCAT CCATTCACTG CACCTATGGG GATCACGCCT
GAACAGCTTG AAGCTGATCC AACAGCCGCT ATCTCTGATG CCTATGACAT GGTACTCAAT
GGTTGCGAAC TCGGTGGTGG TTCAGTACGT ATTCATAACA GTGAAATGCA ATCTGCTGTA
TTCCGTATTT TGGGTATCGA AGAGGAAGAG GCTAATGAAA AATTTGGTTT CCTACTCGAG
GCGCTACGTT ATGGAACACC GCCACATGCA GGTTTGGCAT TTGGCTTAGA CCGTATCGTT
ATGTTGATGA CGGGTGCGAC ATCTATTCGC GATGTAATGG CATTCCCGAA AACGACAACT
GCTGCATGTC CATTAACCAA TGCTCCTGGC TTCGCTAATC CTGCTCAACT TGTTGAGTTA
GGCGTCAATG TTATCGAAAG CGAAGATAAC AAAGAAGAAC AAGAGTAA
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| Protein sequence | MRSQYCGDVN KSHVGQEVTL VGWVNRSRDL GGVVFLDLRD REGIVQVVYD PDLPEVFDVA
STLRSEFCVQ VTGLVRARPD SQVNKDMRTG EIEILGKGLT ILNSAAPLPI NMDKNQHNTE
EQRLKYRYLD LRRPEMADRI VFRSKVTSAV RRFLDDSGFL DIETPILTKA TPEGARDYLV
PSRTYKGQFF ALPQSPQLFK QLLMMSGFDR YYQIVKCFRD EDLRADRQPE FTQIDIETSF
MSSAEVMAKT EEMTRGLFKD LLNVDLGEFP KMTFAEAMRR FGSDKPDLRN PLELIDVADI
LKDVEFKVFQ EPANDPAGRV AVLCIPGGAK LSRKQLDEYA KYATIYGAKG LAWMKVNDLD
KGLEGIQSPV LKFLNEDVVN GLLERTNAKT GDLILFGADK ANIVAEAMGA LRLKAGEDFD
LLNGEWKPLW VVDFPMFEPT SDGGLHAMHH PFTAPMGITP EQLEADPTAA ISDAYDMVLN
GCELGGGSVR IHNSEMQSAV FRILGIEEEE ANEKFGFLLE ALRYGTPPHA GLAFGLDRIV
MLMTGATSIR DVMAFPKTTT AACPLTNAPG FANPAQLVEL GVNVIESEDN KEEQE
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