| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2025 |
|---|
| Symbol | |
|---|
| ID | 5613760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2450245 |
|---|
| End bp | 2451756 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932911 |
|---|
| Product | gonadoliberin III-related protein |
|---|
| Protein accession | YP_001473762 |
|---|
| Protein GI | 157375162 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.281213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTCTA AGAAACCCTT TTACATACTC GTTGCACTGC TATTTATTTT GGGGATCACT
GCGAGCGTTT ATCGTGGCGT AGAACATAAA GTGCCTTTCC TGCCCGGTAA GCAAGTTCAA
AGTTGGGCTG TCGATGCCAA GGTGCAATTT CAAGGCACTG GCGACCCTGC CGAGGTCTCT
TTTTCACTGC CTAACGATCC TGCATTCGAA ATTCTTGTCG AAAATGCAAC ATCACCGGGC
TATGGCTTAT CAATTACAGA TACTAACGAC CAATCTGACC GGCGTGCAAT TTGGTCTGTC
CGTTCGGCGC AGGGGCAGCA AGACCTTTAC TACAAGGTGA CCCTCATTCC GACCGGGTCA
ACTAAGGTCA TCGCTAGCAC AGAACCTTCT GAACCAAAAC CTTATATCTG GCCTGCAACT
GAACAGGCCG CGGCGGAGCA GGCGACACAA GAGGTCTGGG CAAAGAGTGC AACTAATCTA
TCTTTTGCTC AACAGCTGAA CAAAGCCTTG AATGCCCAGG AGAGAAGCCA GAATATTGAA
CTTCTGTTAA GCAGCAACTC TCCCAATAAG CTATTTTTGC ATATGCTCCA AAGCAAAGGG
ATACCCGCTC AGGAAGTGAG TGGTCTGTTT CTTGAAGATC AACGTCGCAG ACAGCAGTTG
AGCAACTTTG TCGAAGTCTA TAATGATGGA GAATGGCACC TGTTCGACCC AACTAATGGT
ACTCAGGGTC GTGATGAAAA TCTGTTACTT TGGGACCGCT CGGGTAAATC GGTACTCGAT
GTCATTGGTG GCGTAAACTC CCAAGTCAAC TTTTCGATGC TTCAAGATAC CCGCTCGGCA
CTGGCAACCT CTCTGGATGT GATGAATAAC CAGGATGCGC TAGACTTCTC ACTCTATCAA
TTGCCTCTGG AAGAGCAAAG CCTGTTCAAG GGGATTTTAT TGATCCCTAT TGGCGTGCTA
ATGGTGGTTT TCTTGCGTGT CATCGTCGGA CTAAAAACGT CAGGGACGTT TATGCCGGTA
TTGATTGCAT TAGCGTTTAT CCAGACAACC TTACTAACCG GTCTTGTTGG CTTCATCTTG
ATCGTTGCCT GTGGCCTGAT GATACGCTCA TACCTATCGG ATCTTAACTT ACTGCTGATA
TCACGAATAT CGGCTGTCAT TATCGTCGTC ATAGGAATTA TTGGCGTATT TACCTTGCTC
GCTTATAAGA TAGGTCTGAG TGAGGGCTTA ACCATCACCT TCTTCCCTAT GATTATTCTC
GCATGGACCA TAGAAAGAAT GTCTATATTA TGGGAAGAGG AAGGTCCTAA AGAGGTGGTT
TTACAAGGTG GCGGCAGTCT ATTCGTTGCA ACACTTGCTT ATCTGGCAAT GAGTGCGACT
TGGGTACAAC ACTGGGTATT TAACTTCTTA GGCATTCACC TGGTAATTTT GGCCGTGGTC
TTGTTGATGG GTCAATATAC AGGTTACCGC TTGCTAGAGC TTAGACGCTT TAAGCCATTG
GCCGGAGAGT AG
|
|---|
| Protein sequence | MHSKKPFYIL VALLFILGIT ASVYRGVEHK VPFLPGKQVQ SWAVDAKVQF QGTGDPAEVS
FSLPNDPAFE ILVENATSPG YGLSITDTND QSDRRAIWSV RSAQGQQDLY YKVTLIPTGS
TKVIASTEPS EPKPYIWPAT EQAAAEQATQ EVWAKSATNL SFAQQLNKAL NAQERSQNIE
LLLSSNSPNK LFLHMLQSKG IPAQEVSGLF LEDQRRRQQL SNFVEVYNDG EWHLFDPTNG
TQGRDENLLL WDRSGKSVLD VIGGVNSQVN FSMLQDTRSA LATSLDVMNN QDALDFSLYQ
LPLEEQSLFK GILLIPIGVL MVVFLRVIVG LKTSGTFMPV LIALAFIQTT LLTGLVGFIL
IVACGLMIRS YLSDLNLLLI SRISAVIIVV IGIIGVFTLL AYKIGLSEGL TITFFPMIIL
AWTIERMSIL WEEEGPKEVV LQGGGSLFVA TLAYLAMSAT WVQHWVFNFL GIHLVILAVV
LLMGQYTGYR LLELRRFKPL AGE
|
|---|
| |