| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2024 |
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| Symbol | |
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| ID | 5613759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2449280 |
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| End bp | 2450242 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932910 |
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| Product | alpha-L-glutamate ligase-like protein |
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| Protein accession | YP_001473761 |
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| Protein GI | 157375161 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02291] alpha-L-glutamate ligase-related protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.728576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGACTGT CATTTACCAA ACCCTCAGCA CTTCGTAAAA AAGGCGTGCT GTGTATGAAT
AAGCGTAATA TTGACTATAT TGGACGCTGT AACCCTCGTA AGTTTTATAA GCGGGTAGAC
GACAAATTAA CGACTAAACA ACTTGCAATT GCTAATGATA TTGCCGTTCC GGCATTAATT
GGCGTGGTGC GTGAGCAACA TGAAATCGAA GAGATCCCCA CAATGGTTCT CGAAGAGGAT
GGTTTCGTTA TCAAGCCCTC TAAAGGCTCT GGCGGCAAAG GGATCTTGGT TATAACCAAG
GTCGAAGAGG GTCGTTACTA TAAGCCTAAC GGCCAAGAAG TGGGGCCAAG TGAGGTGTAC
CGCCACGTCT CAAATGTTCT CAGCGGCTTG TTCTCATTAG GTGGTTCACC GGATGTGGCC
ATCGTCGAAG GACTCATTCA ATTCGATCCG GTTTTCGATG GCTACTCCTA TGAAGGTGTG
CCGGATATCA GGTTGATCGT GTATAAGGGA TTTCCTGTCA TGGGAATGCT CAGACTGTCC
ACCGCGGCTT CCGATGGTAA GGCTAACCTT CACCAAGGTG CAGTAGGCGT CGGTGTCGAT
ATTGGAACAG GAAAGGGGCT GCATGCGGTT CAGTTTGACA CGCCGGTCGA GCTACACCCT
GATACCAATA AGATATTAAC CGATATACAG GTCCCCCATT GGGACTTCCT GCTTCACACG
GCTTCTAAAG CCTATGAAAT GAGTGAGATG GGTTATTTAG GTACCGATAT GGTACTCGAT
AAAGTCAAGG GACCACTTCT GTTAGAGCTT AATGCCAGAC CGGGTCTTGC GATTCAGATC
GCCAATAACC GGGGGATTTT ACCCTACCTG GATCATGTCG ATTCTTTGGG TAACCATAAT
ATGACTGTGG ATGAACGTGT CGAATATGCC AAAAAGCATT TTGCTCATAG CGCTCAGCTT
TAG
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| Protein sequence | MRLSFTKPSA LRKKGVLCMN KRNIDYIGRC NPRKFYKRVD DKLTTKQLAI ANDIAVPALI
GVVREQHEIE EIPTMVLEED GFVIKPSKGS GGKGILVITK VEEGRYYKPN GQEVGPSEVY
RHVSNVLSGL FSLGGSPDVA IVEGLIQFDP VFDGYSYEGV PDIRLIVYKG FPVMGMLRLS
TAASDGKANL HQGAVGVGVD IGTGKGLHAV QFDTPVELHP DTNKILTDIQ VPHWDFLLHT
ASKAYEMSEM GYLGTDMVLD KVKGPLLLEL NARPGLAIQI ANNRGILPYL DHVDSLGNHN
MTVDERVEYA KKHFAHSAQL
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