| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2020 |
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| Symbol | |
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| ID | 5613842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2443847 |
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| End bp | 2445286 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932906 |
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| Product | SrpA-related protein |
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| Protein accession | YP_001473757 |
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| Protein GI | 157375157 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.511866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.928419 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGGCG TCATCTCTTC GCCTGATATT CAGCGAAGGC AGGAACAATC GTTACCTGCT
TCGCCTTCTG TTACTTCAGC TTCGCTTACC TCAGTATCAT TAAAGAGTGA TTCAGCGACT
CACTCATCGG CTAGCTCTTC AAATAGCTCA ACGATTGCAT CCTCTACGGT AACCCGCTCA
TCCGTCGGAC CCAAGCCAGT CAAACCTTTC AGTATTCAAA TGTCGCCAGA TACCGTTGGT
CTCTCCCCCA ATGTTTTTGC CCCGGTGACA AGCTCAGCGG TGCTCACTTC TGATGTCACA
TCGCCTGAAT ATTCCAGACC GTTAGCAGTA ACCGATACAG ATTTAGCCTC TATAGGTGCT
AATGCATTAA GCGTCAATAC GAGCCAGTCT CAGGCTGTGT TTAGTCTTGC GCTCGGCCCC
TTGTCAGTCG CGGGTTTAGT CAATGCGCAA ACCTCCGCCT CGGTTGTTGG GTTAAGCGAG
CCTGTCTTTA ACCCACAATC AAGCTCTCAA TCGGCTGAAG GTTCTGAGAG TCATCCGATT
TTCAACGATA TTTATGCAAC GCCAGTTACT AATACCGACA GCAATGTCGC TACAGATACC
CAAGCCACAC CGACAGCTGG CGACGCAAGC GGTAAGCCAT CAGATAAGCC TGAAAGTGTT
GCGCAAAACA TTTTTGCAAA AGAGCCTCCA GCTCCGGAAG AGAAAGTGAC GGGTTCAATT
TTTGAACCCT CCGATATTAG TAAGAAAGCA TTCGAGGAGC AGGGCAGCGA TAGTAATGCG
GTTGTCGAGC AACAAATTTT GGCAGAATTG TCAAAAAGAG ATGCGCAAGT CAAGGCTCAT
GAGCAGGCTC ACTCCTCTGT GGGAGGGAAT TTGGCTCAGA GTCCACAGTT CAGTTACGAG
CAGGGGAGTG ATGGTAAGAG ATATGCCGTC GATGGTGAAG TGTCCATAGA TATCTCTATT
GTGCCCGGTG ATCCTCAAGC GACGATAAAC AAGATGAGGC AGGTATATGC GGCGGCTATG
GCTCCGGCTA ATCCGTCGAT GGCCGATATC AGAGTTGCAG CCGATGCGAT AAGGAAGATG
AATCAGGCAC AATCGGAACT GGCTGAGAAG AGGCAGAGTG AAGTCATGTC AATTAAAGAT
ATGGCCCCTC TGATAGATGC GCAAACCATC ATAGATGGTT TTACCCCGCC AGAGCCTCCA
GAGATGACGA TAGCTGGAGA GGTCGATGAC ACGGGAGCCA TTCGAAGACC GCAGCCCGAA
GAAGATAATG TGGTGAATCA AACCATAGAG ACGATAAACG GGCAGTTAAC GGCTTCGTCT
GAACCCGTAT TTGAGCTATT GACCAGTAAA GATCAGATTG AAGGTTATCT CACTAAGACC
TTACTCGAAA AATACCTGCC CGTTAATAAC GCCTCCGGCT CCTTGAGCTT TAGCGTTTAA
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| Protein sequence | MLGVISSPDI QRRQEQSLPA SPSVTSASLT SVSLKSDSAT HSSASSSNSS TIASSTVTRS
SVGPKPVKPF SIQMSPDTVG LSPNVFAPVT SSAVLTSDVT SPEYSRPLAV TDTDLASIGA
NALSVNTSQS QAVFSLALGP LSVAGLVNAQ TSASVVGLSE PVFNPQSSSQ SAEGSESHPI
FNDIYATPVT NTDSNVATDT QATPTAGDAS GKPSDKPESV AQNIFAKEPP APEEKVTGSI
FEPSDISKKA FEEQGSDSNA VVEQQILAEL SKRDAQVKAH EQAHSSVGGN LAQSPQFSYE
QGSDGKRYAV DGEVSIDISI VPGDPQATIN KMRQVYAAAM APANPSMADI RVAADAIRKM
NQAQSELAEK RQSEVMSIKD MAPLIDAQTI IDGFTPPEPP EMTIAGEVDD TGAIRRPQPE
EDNVVNQTIE TINGQLTASS EPVFELLTSK DQIEGYLTKT LLEKYLPVNN ASGSLSFSV
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