| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2014 |
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| Symbol | |
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| ID | 5614093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2438644 |
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| End bp | 2440317 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932900 |
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| Product | phosphomethylpyrimidine kinase, thiamine-phosphate diphosphorylase |
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| Protein accession | YP_001473751 |
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| Protein GI | 157375151 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.50038 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAATT TAGAGCTGAC GTCGTCAGCT TTAAAGCCTG TGGTTTGGAC AATTGCAGGC
TCAGATAGCG GGGGAGGCGC CGGCATACAG GCCGATCTCG CGACAATACA AGATCTTGGT
TGTCACGCCT GTAGTGCGAT CACTTGCTTG ACGGCTCAGA ACTCGGTGAG TGTAACCCTG
GTAGAACCTG TGTCTGAGGC GATGTTACTG GCTCAGCTTG ATGTGCTACT AACTGACCTA
CCGCCCATGG CGATTAAGAT TGGACTCTTA GCGAGTCAAG CGCAGTTAAA TTTGCTCGGC
AAATGGCTCA ATACCTCTTT GCGTGAGTTT ACACAAACGA ATGCAATGGA TGTGAGCGTC
ATACTCGATC CTGTGATGGT TGCCAGCTGT GGAGCCCACT TTACTGCTCA ATCAAGAGCT
GAATCAAACA CTAAAAAATT AGATAACGAC TCAGGTCCTG GTTTAGATAG TGACTCAGCT
AATGGTTCTG GAGGATCCGT CCGTGATGGG ACTATCAGTC ATCTGAATTT TCTCCCCCTG
AAAGGGCTGA TCACTCTAAT TACACCCAAC ACGGCTGAGC TTAGTGTATT GTCCGGGCGC
AGGCTCACAG ATTTGAGCGA CTGTCACCGG GCGGCCAAAG CGCTGTCTAA GACATTTGAA
TGTAATGTAT TGGCCAAGGG AGGGGATAAG GGCGCTGCAT GGGAAGCCAA AACTGCACAA
GATATATTTG TCTGTGTTCA GGCGCCCGGT AGCGCCGTAA TTCACCAACA AAGGAGCTTC
TTACTCTCGA GCCCGAGAGT GGACAGTACT AATAACCATG GTAGTGGTTG TACCTTAAGC
TCGGCTATTG CCAGCGTTAT GGCGTGGGGT TTCGTACTGC AAGACGCCGT AGTGGTCGCA
AAGGCCTATG TCACAGAGGG GATAAAGCAG AGCTATCGAG TAGGGAAGGG GCCAGGCCCT
CTCGCTCGTA CAGGCTGGTC TGACGAACTA AGCGGATTTG CACACATAAC TTCATTAGAT
GGCGGCGCTG CACTTCCTGA CGAATTAACT TTTAAGGTCC TCGATGACCG ACTCGGTGTT
TATCCGGTAG TGACCGAACT GTCCATGTTA CAAGCATTGC TAGGCGCCGG GGCTAAGACC
ATTCAGCTGA GAATAAAGGA TGCTGACGAC CCTGAACTCG AGGCGAAGAT CATCACGGCA
ATTCAGCTAG GCCGGGATTA TCGGGCGAAG GTCTTTATCA ACGATTATTG GCAACTTGCG
GTTAAACATC AGGCCTTTGG TGTACACCTG GGCCAGGAGG ATCTCTATGA TGCAGATCTG
ACCCAAATTG CACAATCCGG ATTAGCACTA GGGGTATCGA GTCATAGCTA TTTTGAGCTG
TTACTCGCCT CGCAATTTAA GCCCTCCTAT ATTGCGCTTG GACATATTTT TCCGACAACG
ACCAAGGTCA TGCCGTCTTT GCCTCAGGGA CTCCATAAGC TTAAACATTA TGTTGACCTG
TTAAAAGGGC ATTTTCCCTT GGTTGCGATT GGCGGCATCG ATCTCAATCG ACTCCCCGCT
GTGAAGAAAA CGAATGTCGA TGACATTGCC GTGGTTCGTG CGGTGACTGA AGCCGATGAA
CCGGCAGTCG CGTATCAAAC ACTGGTCGCA GCATGGAGTA TCGAGGATGA ATGA
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| Protein sequence | MTNLELTSSA LKPVVWTIAG SDSGGGAGIQ ADLATIQDLG CHACSAITCL TAQNSVSVTL
VEPVSEAMLL AQLDVLLTDL PPMAIKIGLL ASQAQLNLLG KWLNTSLREF TQTNAMDVSV
ILDPVMVASC GAHFTAQSRA ESNTKKLDND SGPGLDSDSA NGSGGSVRDG TISHLNFLPL
KGLITLITPN TAELSVLSGR RLTDLSDCHR AAKALSKTFE CNVLAKGGDK GAAWEAKTAQ
DIFVCVQAPG SAVIHQQRSF LLSSPRVDST NNHGSGCTLS SAIASVMAWG FVLQDAVVVA
KAYVTEGIKQ SYRVGKGPGP LARTGWSDEL SGFAHITSLD GGAALPDELT FKVLDDRLGV
YPVVTELSML QALLGAGAKT IQLRIKDADD PELEAKIITA IQLGRDYRAK VFINDYWQLA
VKHQAFGVHL GQEDLYDADL TQIAQSGLAL GVSSHSYFEL LLASQFKPSY IALGHIFPTT
TKVMPSLPQG LHKLKHYVDL LKGHFPLVAI GGIDLNRLPA VKKTNVDDIA VVRAVTEADE
PAVAYQTLVA AWSIEDE
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