Gene Ssed_2009 details

Gene Information

• Locus tag: Ssed_2009
• ID: 5613928
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: -
• Start bp: 2429778
• End bp: 2433242
• Gene Length: 3465 bp
• Protein Length: 1154 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640932895
• Product: hypothetical protein
• Protein accession: YP_001473746
• Protein GI: 157375146

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.404809
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 0.0304235
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACAAGT CAATGCTTTG CTTGGCCATA ACAGGAGCTT GGGCTCTTAC CGGCTGTGGC 
GCTGGAGAAG AACCCTATAA GGAACTTCCC AAAGATGAAA AACAGATCAC CACAGCTGAT 
ATAGACAAGG CCGGCGAACG CCAGTATCTC TATATTCGCA GTGTAGGAAA GGCACCGCGT 
TATGCCGCAT CAATTCGCGG TTTCTCTCAG GGTACACCAA AATTGGTCAC GCTACGCAAG 
ACTGCAAATG GTATTCAGGT GCGCCAAATC GATCGTGATG CCATTGGACT GGATCATGAC 
TCTCGTTATG ACGATGAATA CAACGAAGCT CCTGTGCTGA CCATTCCCGG TAAGTATATC 
GATTACAAGT GTACCGAAGA CAGATGGCGC GAATGTATCA ACGTCGAAGA GGAAAACAGG 
GACGCCGATC TAAAGTGGCA GGACAAAAAC TATTTTATTC CGGACTTTGC CGAGACTAAG 
ATTGCCGAGC TGGGCATTAA CGATCTATTT ATGTTCGGTC AATGCGTTAC CGAAACCGAA 
GATCCACGCC TGGTCAACAG CGGTGACTGG AAAGGCTATG AGATGGATCT GGCCAAGGGT 
GTCATCAACA TCGAAATCGA GCACACCTAT CAAGCCGAGC CACAGTGTCT CAATAAGTTC 
TATAATGGCA GCCTGGATAA CCTCTCATTT ACCAGCACAG AATATATCTC TATCGTTGCC 
ATCGATGAAC TGGCAAATAA AGAATATCAG GCGATCCCAT ACAGCCCGAA CGAAAATGGA 
ACCTACGGAT TCTTCACCTC GGATCACAGC TATCGCGATG CCACTGACAG CGCCGGTGTC 
GATGGATATG TTCGTACCTA CATGAACCGG GTCGATCCAA CCAAGAAGAG CTTAACTTAC 
TATCTGAGTA ATAACTTCTT CTTGCCAAAA AACAAGCCAT ATTTAGACGC TGCACATCAA 
ACGATCACAG CGCTTAATAT CGAAAATAAG CTCTACAAGA CAGGCTTCCC GGAGCTTATT 
ATCGAACAAG CCCATGATAA GCGTCATGGT GACTTGCGCT ACAGTAACAT TACGCTGTTC 
GATGAGCCTC TCGATAATGG TTTAGCAGGC TATGGTCCCT CTGCCGCTAA CCCTGCAACG 
GGTGAAATCG TCAGTGCCCG AGTGAATCAG TACAGCTCTA ACCTGAAACA AGGCGCAGTG 
CGTTATTATC GCCAGGTTCG CCTCGATTAT AATCGTGGCA AGTTAGACGC ATCATCTGCG 
GCAGAGCTCA CTGGTGTACC TTACTCATCA ACCGCTACAG CGGAAGTTGT AAAAGTTACC 
GACACAACTG CAGATACAAG CATGTTTGCT AAGCCTGAAA CCACTCTTGA GGTTGCGGCC 
AGCACGCTTC CAAAATTACC GGTAGACAAC ACTTTCGAAA ATTTAGTCGA ATTTGATGCC 
GATACACAGG CATTCTGGTC AGAAAACAGC ATGATGCATG TTGATACGGT ATTTGCCGAA 
GGTGGTCAAA ACCGTGAGCT CCCAAGGGGT GTTAAAGATC ACGAGATCAA CTGGAAAAAT 
CCATCCTTGT GGGTCGATGG CAGCATAGGC AATAAACTTA TTGCCTTCGA AGAGATGCCA 
ATCGCTTTGC AAGATGAACT AACGACTCAA CTTGCGGCTC AGGCTTTCGC CGGAACCCTA 
AGTCACGAGC TTGGTCATAC TTTCGGTTTG AGACATAATT TCTCCGGTAG TACCGATGCC 
GATAACACCT TCAGTGAAGC TGAGCTAAAA GCACTCAATG ATCAGTTTTC TGCAGCGGGT 
TACCCGAACC TGACGGCTAA AGCAGAATTC TCAAGCCAGA TGGACTATAA CGTCAACCGT 
TTCGCGACTA TGCTGCAGCC CTACGACTTA GCCGCGCTTC GTTTCGGTTA TGCCCGTGAG 
GTCGAGCTTA AAGGCGAGCC TGAAACAGCC ACTAAGTTTG TATCTCTTAA AGAGGAAGAT 
GAGAAGCGTC GTCAGGAACT TATTGATGGT AACGTCAATG GAGACACGCG TTTTGGTGCG 
CTATATAACA TTGCTCAACA GCACGACTTA CGTAGTTACT CTTTCTGTAC CGATGGTCAT 
GTATCATTGA ACAGCAACTG TAACCGTGGT GATGCAGGCG AAAACTTAAA TGATATTGCC 
CAGTTCTATA TAGATAAGTA TAACGATAGC TATGAAACCG CGAACCTGAG ACATAACCGT 
CAGACCCTGT TCGAAGATCA TACCCTAAGC TATACCGTAG GCCGTAAGCG TCGTTTCGAT 
GAAATTCGCC AATTTGTCGA AGACATCAGT AGCCTGGAGA ATATTTTCGG ATTACCTGAA 
AACTACTTCG TCGAGCCATG TAAAGATGAT TCTGCAACGG CCTGGTATTG TAGCAATCAA 
CGAGCCTTGA ATGATGCCGC TCAGTTCTTT TTAACGCTCG CCGGTGAAAA TGATGCAAGC 
GTCGATGTGA CTTTCAAGAT GGTCGAAGAT GGCTCTGTTG CCATGAGAAA GTCCTATAAC 
TTCGCCGAAC TGCTGGCCCA GTACCGTTTC AAGAGCGGTG ATATGAAAGC TCAGTTCGAG 
CCGGGTGAAG TTATCAGTAA GTTCTCTGAC TCACCGGAAG CCCTTAAAGA TCTGATCCTT 
AACTACGCGA TTAACCCAAG CTTCCATGAC AAGCTGGATA TGGATGTGAC CTTCTCGGGT 
CGACTACTTA ACGGTATTAA GGTACCAGCA TCGTCACCCA ACCACCCTTA TGTCAACGAA 
CGTGATGTAT TAGGTGTTTG GCCTGACAAA TTACTTGCGG TTCGTGCCTT AGTCTCCAGA 
ACGACTGCTC GCAGTACGAC CGGACGTGGC TATAAGGCAC TGGTTGATCT TCCTGAAGTT 
GGTAATGACT TCAAGGATAT GCTGTGTAAG ATGGTAATGG GAGACGGTCC GGGACTCACA 
AATGGCGGCA CAGCGCTATT TGTCGAGTCT TGTGGTGCAA GCGGCAAACT TAATGAGTTA 
TTGCCTAACT ACGTCGACTT TGCTACTCAG AGTATCGAGC CACTGCCTAA CTACGATCGC 
ATGGTGTCAC GCTATTTTGG TTTCGATACC GTCAATGGTC AGCCTAAAGG TAAGAGCAAT 
CTTCTGGAGC TGATGTTACG TCAAGTCGTT CTCGCCTCCG TAGATAGTGA CTATCAGGGA 
GAGCAAAAAG CAAGGATCTG GCGTGAATAT GTGAGCATCC ACCTGGCGGG ACCGGCACTT 
GACTCGCAAG CAGAGATTAA GCTGAACGGT CTTATTTACG TTGCTACATC TGAAAATACA 
CTGGCGATGA ATCTAATCAC CCGTATCCAG AGTGTTGAAG CGTTCATAGA AAGCAACCCT 
GATTCGATGG ACATTAAACT TACCGCGGGT ACGGTTGGCG AGATATTGAA TGGCCAGCTC 
GAACGTGACC GTTTAGTGCT CACTTATCTA CCGGTTACCT ATTGA 

 

Protein sequence

MNKSMLCLAI TGAWALTGCG AGEEPYKELP KDEKQITTAD IDKAGERQYL YIRSVGKAPR 
YAASIRGFSQ GTPKLVTLRK TANGIQVRQI DRDAIGLDHD SRYDDEYNEA PVLTIPGKYI 
DYKCTEDRWR ECINVEEENR DADLKWQDKN YFIPDFAETK IAELGINDLF MFGQCVTETE 
DPRLVNSGDW KGYEMDLAKG VINIEIEHTY QAEPQCLNKF YNGSLDNLSF TSTEYISIVA 
IDELANKEYQ AIPYSPNENG TYGFFTSDHS YRDATDSAGV DGYVRTYMNR VDPTKKSLTY 
YLSNNFFLPK NKPYLDAAHQ TITALNIENK LYKTGFPELI IEQAHDKRHG DLRYSNITLF 
DEPLDNGLAG YGPSAANPAT GEIVSARVNQ YSSNLKQGAV RYYRQVRLDY NRGKLDASSA 
AELTGVPYSS TATAEVVKVT DTTADTSMFA KPETTLEVAA STLPKLPVDN TFENLVEFDA 
DTQAFWSENS MMHVDTVFAE GGQNRELPRG VKDHEINWKN PSLWVDGSIG NKLIAFEEMP 
IALQDELTTQ LAAQAFAGTL SHELGHTFGL RHNFSGSTDA DNTFSEAELK ALNDQFSAAG 
YPNLTAKAEF SSQMDYNVNR FATMLQPYDL AALRFGYARE VELKGEPETA TKFVSLKEED 
EKRRQELIDG NVNGDTRFGA LYNIAQQHDL RSYSFCTDGH VSLNSNCNRG DAGENLNDIA 
QFYIDKYNDS YETANLRHNR QTLFEDHTLS YTVGRKRRFD EIRQFVEDIS SLENIFGLPE 
NYFVEPCKDD SATAWYCSNQ RALNDAAQFF LTLAGENDAS VDVTFKMVED GSVAMRKSYN 
FAELLAQYRF KSGDMKAQFE PGEVISKFSD SPEALKDLIL NYAINPSFHD KLDMDVTFSG 
RLLNGIKVPA SSPNHPYVNE RDVLGVWPDK LLAVRALVSR TTARSTTGRG YKALVDLPEV 
GNDFKDMLCK MVMGDGPGLT NGGTALFVES CGASGKLNEL LPNYVDFATQ SIEPLPNYDR 
MVSRYFGFDT VNGQPKGKSN LLELMLRQVV LASVDSDYQG EQKARIWREY VSIHLAGPAL 
DSQAEIKLNG LIYVATSENT LAMNLITRIQ SVEAFIESNP DSMDIKLTAG TVGEILNGQL 
ERDRLVLTYL PVTY