| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2007 |
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| Symbol | |
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| ID | 5612153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2427516 |
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| End bp | 2428931 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932893 |
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| Product | putative two-component system sensor kinase |
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| Protein accession | YP_001473744 |
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| Protein GI | 157375144 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0750477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00355536 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGTCA TGAAGTCACC CAATATGTTT CTACCTTTTA CAGGACGCTT CTCACGCCTT
CAGGTTAAGC TGTTTAGTTA CTTCGCCGTC TCACTGTTGG CCATTTTACT CATAGCGACT
GCAATTGAGA GCGTTGTACT CAATCAACTG CTCACTCTGC CCACATCGAC CCAGGAGCAC
CTTCAAAAGC TTGCGAATGA AGCCAAAGCA CTTTTGGAAA AAAATGATAT TGAAGGGCTT
GCAAAATGGG AAGAGCAGCA AGATTTCACG CTCTATATAT TGGATAAAAA CCAGAACACT
GTGAGCCACA GAGAGATGCA CCCCCACTTT GTCTTTAAAT TGCAATACAT GAGGCAGTTA
CAACAGCCAA TGGGAGATCG CGTTAGAAAG CCCCTGATCG GCATACCTCT GTTCGATAGC
TTTAATTCTG ACTCTCCCTT GACTCTGGTC GTTCAGCTCA ATGCCGATCT CCATCCGGCA
CAGCAGCTCA GCAGCAGCCT TTGGCTCATC AGAACATTAG TCGGCATTAC CGTCTTGTTT
CTCTTCTCCT CCCTGTTGGG ACGCTACCTG ATCCGACCTT TGACTCACCT TCAAACGGGA
ACAAAGGCAC TAGCGGGGGG AGCGTTAACC ACACGGATCG CCCATCATTT TTCTGTAAAA
GAGCCTGAGT TTTATCATCT TGCGACTGAG TTTGACCATA TGGCCGAGCA GTTACAAAAC
AGTATGCAAA ATCAGGAGAG GTTATTGAGG GATGTCTCCC ATGAGTTGAG GACTCCATTG
GCCAGACAAG AGATTGCACT TCACCTGTTA GAGAAACAAG CCACAGCTCA GCAGATGCCA
TTGATATCGA GGTTCAAAGA TCAAAATGAA CAGATGGCAA AGCTTATCGA CAGTATTCTT
AATTTTAGCC GCCTTAATAA TGCCAATATC AGTCTTAATC CAAGTCCATC GTCAATCAGT
TCATTAAGAG ATCGAATACT CAGAGATATT GAATTTGAAG CCGGGGATAA GCAGACAATC
AACTGGACTG AACCGGGCGA GGATATCCCT TTATACACAG ATACGAGTTA CCTCATCAGC
GCCATAGAGA ATGTACTTCG AAATGCCCTT AAATATGCGG GCCGGGAGTG TCACATCGAG
GTAAGCTGTT TGGCCCTTGA TGAGACACTC AAGCTAGAAT TTCAAGACGA TGGTCCCGGA
ATTAGTGAAG AGGAGCTCAT CACTCTGTTT AATCCATTTA CAAGAATGGA TGAGGCACGT
CACTCGAGTC AGGGCGGTTA CGGCTTAGGG CTTGCCATAG TGAAGCAGAG CATCTGGTTA
CTCGGCGGTG AAGTCAGCGC TCGAAACAGC AAAGATGGCG GTCTTTGCAT CAGCATGAAT
CTGCCTCTTA AACTGAAATC CCCATTGCCC GTTTAG
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| Protein sequence | MTVMKSPNMF LPFTGRFSRL QVKLFSYFAV SLLAILLIAT AIESVVLNQL LTLPTSTQEH
LQKLANEAKA LLEKNDIEGL AKWEEQQDFT LYILDKNQNT VSHREMHPHF VFKLQYMRQL
QQPMGDRVRK PLIGIPLFDS FNSDSPLTLV VQLNADLHPA QQLSSSLWLI RTLVGITVLF
LFSSLLGRYL IRPLTHLQTG TKALAGGALT TRIAHHFSVK EPEFYHLATE FDHMAEQLQN
SMQNQERLLR DVSHELRTPL ARQEIALHLL EKQATAQQMP LISRFKDQNE QMAKLIDSIL
NFSRLNNANI SLNPSPSSIS SLRDRILRDI EFEAGDKQTI NWTEPGEDIP LYTDTSYLIS
AIENVLRNAL KYAGRECHIE VSCLALDETL KLEFQDDGPG ISEEELITLF NPFTRMDEAR
HSSQGGYGLG LAIVKQSIWL LGGEVSARNS KDGGLCISMN LPLKLKSPLP V
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