| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1998 |
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| Symbol | |
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| ID | 5613580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2416856 |
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| End bp | 2418706 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932884 |
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| Product | sodium/hydrogen exchanger |
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| Protein accession | YP_001473735 |
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| Protein GI | 157375135 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
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| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000112153 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTCGAAC AGATCACAGC CATGCTGGGA CTGGTAGGTG TGTTATCTCT TGTTTGCCAG
TGGGTAGGCT GGAAAATGCG ATTACCTGCG ATTTTGCCTC TCCTGTTATG TGGTTTAATC
ATGGGGCCTG TGCTCGGTGT ACTGGATCCC GATGAGCTTT TCGGTGAACT GCTTTTCCCG
ATTATCTCTT TAGGTGTTGC CGTCATTCTC TTCGAAGGCG CATTAACGCT GAACTTTAAA
GAGATAAAAG ACCATGGCCG TATGGTCACC CACCTGGTAT CGATAGGTGC GCTGATCACC
TGGCTCTGTA TTGGAGGCGC AACTCACCTG CTTTTAGGCT TTAGTTGGAC GATGGCCATG
TTATTTGGTG CCCTGGTGGT TGTTACCGGT CCGACGGTTA TCGTGCCTAT GCTTCGAAGT
GTTAAGCCAA AGTCACAACT GGCAAGCATT TTACGCTGGG AGGGGATCAT TATCGATCCC
ATAGGTGCAC TCCTTGCCGT ATTGGTTTTT GAATATATCG CCGTGGCCGC CGATCCGACT
ACACATATGA TCTATGCACT CGGCTATATG CTTGGGGTCG GCTTAGGTTT AGGCGCATTG
GCCGGGTACT TTGTCGGACA GATCTTAAGG CAAAACCTTC TGCCTCACTA TCTGAAGAAT
ACCGCGGTAT TGACCATTAT GTTGGGCGTG TTCGTCGGCT CTAATTTGTT GCAGGAGGAG
TCCGGGTTAC TGAGTGTCAC CGTTATGGGC ATCTTCTTAG CCAATATGAG AGGAGTCGAT
ATTGCCGATA TCATCGAGTT TAAAGAGACG CTAACGGTTC TGCTTATCTC CGCGTTATTT
ATTTTGCTGG CTGCTCGCCT GGACTCTCAT GCCCTGTTAA GTCTGGGATG GGAGGGAGTA
GGGGTATTGG CGATTGTAAT GTTTATTGCT CGCCCCCTGA GTGTCTGGTG CTGCGGAATA
GGCACGTCTT TAAGTCGAGC TGATAAGTGG TTTTTAAGTT GGATGGCACC CCGGGGCATC
GTCGCGGCGG CCGTTTCTTC GCTCTTCGCC ATTAAGCTCG AAGGGTTAGG GGTCGAAGGA
GCGGGGTTAA TTGTGCCTTT GGTATTTTTA ATTATCATAG GAACTGTGGT CATTCAAAGT
TTAACTGCGG GGATCTGGGC CAGATATCTG GGAGTCAATG CCGGCTCTTC CGAAGGTTTA
TTGATTTTTG GTGCTGCGCA GTTCTCAAGG GAGCTGGCAA AAGTTCTAAA ATCTAAACAG
GTTAGCGTTA TCCTGGCGGA TAATAACTGG AACAACATCA GATTGGCTCG TATGGACAAC
ATTCCCGTCT ATTTCGGAAA CCCCGCATCG GAGCATGCGA CGAATTTTCT CGATATGACA
GGAATAGGGC GCCTGTTGGT TATCTCTCCC TATCGGCAGC TCAATCCTCT GGTGAGTTTT
CATTATCAAG ATCTGCTTGG TAGTGAAAAA GTATACGGAT TGAGTAACGC TGAAGAGACA
AGCGCGAGGC ACCAACTATC CGAAAGCTAT ATGAAAAGGC TTTGTTTATT TGGTGAGTCC
GTTTCTTACG CTAAATTGGC GAGTCTAATG TCCAAAGGGG CAGTGATTAA GAGTACCAAT
ATTACCGATA ACTTCAGCTT TAATGATTTT TGCACCCGCT ATGGAGACAG TGCCATGCCG
CTTATCTATC TGGAGGGGAC GAAAGTGCAT ATATTTACCG CTTCGGATAC CCGGCTATCA
AGCGGAATCG AGTTGATCAG TCTCTTACCA GTCGAGGCAC AGGCGTTGGC TAGGGAGCAG
GATAAGTTAT CGGAGAGTCT GGATGAAGCT GAGAGCGATT CAAAGGATTA G
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| Protein sequence | MVEQITAMLG LVGVLSLVCQ WVGWKMRLPA ILPLLLCGLI MGPVLGVLDP DELFGELLFP
IISLGVAVIL FEGALTLNFK EIKDHGRMVT HLVSIGALIT WLCIGGATHL LLGFSWTMAM
LFGALVVVTG PTVIVPMLRS VKPKSQLASI LRWEGIIIDP IGALLAVLVF EYIAVAADPT
THMIYALGYM LGVGLGLGAL AGYFVGQILR QNLLPHYLKN TAVLTIMLGV FVGSNLLQEE
SGLLSVTVMG IFLANMRGVD IADIIEFKET LTVLLISALF ILLAARLDSH ALLSLGWEGV
GVLAIVMFIA RPLSVWCCGI GTSLSRADKW FLSWMAPRGI VAAAVSSLFA IKLEGLGVEG
AGLIVPLVFL IIIGTVVIQS LTAGIWARYL GVNAGSSEGL LIFGAAQFSR ELAKVLKSKQ
VSVILADNNW NNIRLARMDN IPVYFGNPAS EHATNFLDMT GIGRLLVISP YRQLNPLVSF
HYQDLLGSEK VYGLSNAEET SARHQLSESY MKRLCLFGES VSYAKLASLM SKGAVIKSTN
ITDNFSFNDF CTRYGDSAMP LIYLEGTKVH IFTASDTRLS SGIELISLLP VEAQALAREQ
DKLSESLDEA ESDSKD
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