| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1989 |
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| Symbol | |
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| ID | 5612822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2406343 |
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| End bp | 2407161 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932873 |
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| Product | hydroxyacylglutathione hydrolase |
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| Protein accession | YP_001473726 |
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| Protein GI | 157375126 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
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| TIGRFAM ID | [TIGR03413] hydroxyacylglutathione hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000136825 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000132084 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAGACG CGCAATCGCT AGTACCACAA TCCAGCTCTG ATAGCATAAC CGTTACGCCA
ATATCCGCGT TTGATGATAA TTATATCTGG GTCATCTCCC AAGCATCACA CTCTTTTGTT
TATGTCGTCG ATCCGGGTGA TGCTGAGGTG GTAATAAGTC ATCTGGAAGA GCACAAACAG
GTCTTGGCAG GTGTATTAAT CACTCACCAT CATGAGGACC ATACCGGAGG TCTTGAAAGA
CTCATCGAGT ACACAGATCA TGAATTTGAT ATTTTTGGCC CGAAAAATGA AAATATCGCC
CATGTAACGA CGCCTATATC AACCCAAACA GAGGTCACAC TGTCAAAACT AACCTCGAAG
GCAAAGATTA TCTCTGTCCC GGGGCACACC TTAGGCCATA TAGCCTATCT GATAGAAAGC
CACCTATTTT GCGGTGACAC GCTCTTCAGC GGAGGCTGCG GTCGAATATT TGAAGGAACG
GCTGAGCAGA TGCACCACTC ACTGCAAGCA TTTGCCAAAC TGCCCCTCAA TACTCAGGTC
TATTGCGCTC ATGAATACAC ACTTTCAAAC CTTAAGTTTG CCCTCGCAGT CGACACGGAA
AATGAGGCCT TGGCGGCTCA TAATACAGAC TGTATCGCAC AACGAGAGCT AGGAAAGCCA
ACCCTCCCAT CAAGTATTGG GCAGGAGCTT AGTATCAACC CTTTCCTACG CTGTCATACT
CAGGCGATCC AGCGCTCAGT TTCCAACCAT TTCGAGGTTA ATCACTCAGA TAATGTCACC
GTTTTCGGGC TTCTCAGACA ATGGAAGGAC AATTTCTAA
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| Protein sequence | MQDAQSLVPQ SSSDSITVTP ISAFDDNYIW VISQASHSFV YVVDPGDAEV VISHLEEHKQ
VLAGVLITHH HEDHTGGLER LIEYTDHEFD IFGPKNENIA HVTTPISTQT EVTLSKLTSK
AKIISVPGHT LGHIAYLIES HLFCGDTLFS GGCGRIFEGT AEQMHHSLQA FAKLPLNTQV
YCAHEYTLSN LKFALAVDTE NEALAAHNTD CIAQRELGKP TLPSSIGQEL SINPFLRCHT
QAIQRSVSNH FEVNHSDNVT VFGLLRQWKD NF
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