| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1981 |
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| Symbol | |
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| ID | 5612690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2396144 |
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| End bp | 2397166 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932865 |
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| Product | putative sulfite oxidase subunit YedY |
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| Protein accession | YP_001473718 |
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| Protein GI | 157375118 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2041] Sulfite oxidase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.141842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.726615 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTTTC ATAAGAGACC ATCGTGGGAC AAGTTTAAAG ATTGTGATGT CACACCCGAA
CAGGTGTTTA ATGATCGTAG GCGCATCTTA AAGCAGATGG GGTTTGTCGG TGCCGGTGCA
TTATTGTCGT CGAATGCCAA TGCCGGTATT TTTGATCTGT TTGGTGATAA AAAAGATAAG
CCTCAGTTCT TACGTTCAGA TTTACCCCAC AGCAAAAATA CGCAATATGA TTCTGTGCTA
AACGGTGTAT TAACACCCGA GAGCAAGGTA ATTACACATA ATAATTTCTA TGAGTTTGGC
ACTGCCAAAT CTGATCCTGC TGAAAATGCA CAAGGCTTCA ATGTCGAGCC GTGGAAGTTA
GTCGTAGATG GGTTAGTCGA TAATCCTCTG ACACTGGATT ATGACGACCT GATGAAGCTA
TTTGCATTGG AAGAACGGAC TCATCTGCTT AGATGTGTAG AAGCCTGGTC CATGGTGATC
CCTTGGATTG GTTTTCCGCT GGCGGCTTTA CTTAATAAGG CGGGAGTGAA GAATAAAGCC
ACCCATGTCG CTTTTGAGAC CCTGTTCGAA CCTGAGCAGA TGCCGGGTCA AAAAAGCAGA
TTGATGGGGG GAGGGATCCA TTACCCCTAT GTCGAAGGCC TCACCATGGC CGAGGCGATG
AATGACCTGT CATTTTTGTC TGTTGGCCTA TACGGGAAAA CGTTACCGCC ACAAAATGGA
GCGCCCATCC GCCTGGTCGT TCCATGGAAG TATGGTTTTA AGAGTATTAA ATCCATTGTG
CGAATTCGAG TCACGGACAG GCAGCCACCG ACGAGCTGGA ATCAGTTAGC CTCGAATGAA
TATGGCTTCT ATGCCAACGT GAATCCACAA GTGGATCATC CTCGCTGGTC TCAGGCAACG
GAGCGGCGGA TCGGTGAAGG AGGGCTGTTT TCAGCAAAGA GAATTAAGAC ACAAGCTTTC
AATGGTTATG GCGAACAGGT GGCTGACCTC TATAAGGGCA TGGATCTTAA GAGTGATTTC
TAA
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| Protein sequence | MHFHKRPSWD KFKDCDVTPE QVFNDRRRIL KQMGFVGAGA LLSSNANAGI FDLFGDKKDK
PQFLRSDLPH SKNTQYDSVL NGVLTPESKV ITHNNFYEFG TAKSDPAENA QGFNVEPWKL
VVDGLVDNPL TLDYDDLMKL FALEERTHLL RCVEAWSMVI PWIGFPLAAL LNKAGVKNKA
THVAFETLFE PEQMPGQKSR LMGGGIHYPY VEGLTMAEAM NDLSFLSVGL YGKTLPPQNG
APIRLVVPWK YGFKSIKSIV RIRVTDRQPP TSWNQLASNE YGFYANVNPQ VDHPRWSQAT
ERRIGEGGLF SAKRIKTQAF NGYGEQVADL YKGMDLKSDF
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