| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1979 |
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| Symbol | |
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| ID | 5611876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2392308 |
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| End bp | 2394257 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932863 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001473716 |
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| Protein GI | 157375116 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.99613 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATAAGT GGTTAATCGG CATTTTAACA AACAGATCGC TCGCTATTGT CACGACCTTA
ATGGCAATAA CGGCCATTAC TGTCACCTGG TCGGCTCATT CAAGCGACTA TACTCCCGAA
CAGCAGAGAT ACTTAGACGC GCGTAAAGCG CTAGATAACA ACAAGAGCAA GAGCTATAAA
CGATTGCGGT CTCAGTTAGA CGACTACCCC TTAGCCGTCT ATCTCGACTT TCATGCCAAT
ATCAATAGCA TTTTGACCCA CAAGGGCGAA AAAGCACTGA AGGAACTCGC TCAATTTGAG
GCGACCCCTC TGTACAACAC GGCTAGATTT CGTTACCTGA AACGAGCGGG CTCCCGAAAA
CAGTGGCAAG ATTTTTTAGT TATCAGTCCA AGCAGGCCAA ACAACATCGC CCTTCAGTGC
TACTTCTATC GTGCGCAACT CATCCAAGGC AATGAGGAAA TGGCATTTAA AGGAGCCCAA
GCACTCTGGT TATACGGAAA ATCTCGCCCA GATGAGTGCG ATCCCCTGTT TAAGGCATGG
GAGAAGGCCG GCTATCGCTC ACAAGAGTTA ATCTGGTCAC GCATGTTACT CAGCTTCAAT
GCCAACCAAT ACTCTCTACT GAAGTACCTG TCGAAGAAGG TCACAACACA TAAGACAGAG
GCGAAGAAGC TGCTTACGGT TTATAAAGAT CCCAGAAGTT TAAGACATAC CAAAAAATAT
AAAGGTTCTG CCAAGATATA TGCCGATATC GTCGATTCAG GCTTAAGAAA GCTAGCCAGA
AAAGACCTTA ACCAAGCCGT AAAGCTCTAT GTTACCTACC AAAAAGCGGA TAGATTCAGT
GACTATCAGG GGCGAAAACT CAGCCGTTAC CTGATTAAGC GAGCGATTAT CAAACAGGAG
GACAAACTCA AAGGCTTTGT CGATTCGATG CTTCCCCTGC TGGACAGTGA TGATCTAATC
GAAGCCAGAT TGAGATGGGC GTTACGTGAA AATGATTTTG TGTCGGTCAA TACCTTCTTA
CCCCAGCTCA GTGATCAAAA AAGCGCTAAT CCCAGATGGT TGTATTGGCA ATCTAGAATC
GATAGATCGG ACAACAACAC AGATCCCACT AAGTTAACTC ACCTGAGTCA GCTTCGTAAT
TTTTATGGTT TTACCGCAGC CAACGAGCTA AAGGCTAACT TCACCTTAGA ACACCAAGAC
ACGGTGAGTG ACGGGACATT AAGAGAAAAG CTCCACAATG ATCTAGGATT AAGCCGTGTC
ATTGAACTGC TTGCTATCGA TAAAATCATC GATGCCAGAT CTGAATGGAT ACAAATGTTA
AACCGTCACG GCAAAGCGAT GCAAAAAGAG TACGCAACGC TGGCACTGGA AAACCAGTGG
CATGACCTTG GCGTGCAGGC CAGCATTCAG GGCAAACTCT GGAACGACAT GACACTAAGG
TTCCCCTACG CCGCCGATAC AGCCTTTATC AGAGCGAGCA AGAAGCAAAA AGTTAGCATA
GATGAACTGA GATCCATAGC CCGAAGAGAG AGTGCGTTTT ATCCCTATGC AACCTCAGGC
GTCGGCGCCC GAGGTCTGAT GCAATTGATG CCAGCGACGG CAAAAGAGAC TGCCAGAAAA
GAGGGGGTCA AGTACAAAGG CCGACGTAGC CTGTATCAGG CGGAGACGAA CATTCGTCTG
GGCAGCGCCT ATTATGCCGG CTTACTCAAA CAGTTTAACA ATAATCGGGT ACTGGCGACC
GCCGCGTACA ACGCCGGGCC TCACAGGGTC AAGCGTTGGC TAAAGCAGAC AGAAGGTAAG
CTGGATGTCA TGACTTTTAT CGAATCGATA CCTTTTACTG AAACCCGGGA GTATGTGCAA
GCTGTGCTCA GTTATCGCGT GATCTATCAA GTCAAACAGG GGAAATCACC TGAACTGTTT
TCGGCTCAGG AGTTAAATTT CAAATACTAA
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| Protein sequence | MHKWLIGILT NRSLAIVTTL MAITAITVTW SAHSSDYTPE QQRYLDARKA LDNNKSKSYK
RLRSQLDDYP LAVYLDFHAN INSILTHKGE KALKELAQFE ATPLYNTARF RYLKRAGSRK
QWQDFLVISP SRPNNIALQC YFYRAQLIQG NEEMAFKGAQ ALWLYGKSRP DECDPLFKAW
EKAGYRSQEL IWSRMLLSFN ANQYSLLKYL SKKVTTHKTE AKKLLTVYKD PRSLRHTKKY
KGSAKIYADI VDSGLRKLAR KDLNQAVKLY VTYQKADRFS DYQGRKLSRY LIKRAIIKQE
DKLKGFVDSM LPLLDSDDLI EARLRWALRE NDFVSVNTFL PQLSDQKSAN PRWLYWQSRI
DRSDNNTDPT KLTHLSQLRN FYGFTAANEL KANFTLEHQD TVSDGTLREK LHNDLGLSRV
IELLAIDKII DARSEWIQML NRHGKAMQKE YATLALENQW HDLGVQASIQ GKLWNDMTLR
FPYAADTAFI RASKKQKVSI DELRSIARRE SAFYPYATSG VGARGLMQLM PATAKETARK
EGVKYKGRRS LYQAETNIRL GSAYYAGLLK QFNNNRVLAT AAYNAGPHRV KRWLKQTEGK
LDVMTFIESI PFTETREYVQ AVLSYRVIYQ VKQGKSPELF SAQELNFKY
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