| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1977 |
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| Symbol | |
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| ID | 5611874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2389976 |
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| End bp | 2391373 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932861 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family protein |
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| Protein accession | YP_001473714 |
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| Protein GI | 157375114 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCTTC GAAGTCTTCA AAACAGACCA CTGAAGTTAT CAAGTTTATG TCGAATGTCT
GTGATAGGGC TTGTCGTATC GGGGTTACTT GGCTGTAGCA CAACCAGTAG ACCCTCATTT
GATCAATTAG CTCAGGATGC AAAGACAAAT TATCAGACTT GGAGTGAGGT GCAGCAAGAT
GCTTTACTGG CGAATGAGAT CACCGAGCTT GTTGCAATAC CTGAGCTAAC TCAACTCGTA
AGTCATGCTT TGAGCCAAAA TCCAGGGCTG CAGCAAACTG CAATTGCGGT GAAAATTGCT
TATCAGCAGC AAGGGTTGAC AAATAGCGCT AGATTACCCC AAGTTTCCGC TGGCTTAACG
AGTGAGAATA GTGAAGATAA CGAGATCAGT TACAAATCTG ATGTCACCGT AAGTTGGGAG
TTAGATCTAT GGCAAAAGCT CAGTGATGAA GTGAGCGCCG CAGAGATGGA TTTAGCCGCA
TCCTCGGTAA ACTATCAGGC TGCAAAAGAT CTGCTTGCTG CAAATGTGAT GCGCAGTTGG
CTTAAAATAA ACTTGCAGCA GCAGATAATA CAAATTGAAG AACAGCGCTT AGAGAGCCAA
GAAGCAAACG AGCTATTTAT TCTAGAGCGT TATCGTTCAG GGCTTGGCGA TTTAGAAGGA
TTAGATACAG CCAGAACTAA TAGCGAGACA ACACGTTCAA CATTGGAGAG TTTCCGAGAA
GATTTAACGA GAGAGCGACG TACCTTGGCG TTACAGCTTG GGTATAATGC GAACAATAAA
CTTATTCCTA TTTCTGCTAG TTACCCTGAG GTTATTCAAC CCTTAGCAAG TTTACCTGAG
CAAGATTTGG GGCGACGTCC CGATTTACAA GCAGCCTACT TTACAATTTT AGCCCAGCAG
TATCGTACCG ATATAGCCTA CAAATCCTTA CTACCATCAA TAAGTTTGAC AGGTTCTTTG
ACTGAAATTG CTAGCAATCC AAGTGATGCC CTTTTCGGTG GAAGTGCATG GAAACTACTG
AGTTCAATAA CTGCGCCGCT GTTTCAAGGC GGTAAATTAA GAGTCGATAT TGAAATTGCC
AAGCTAACCA CCGAAAAAGA TTACTGGGCA TATCAAGAAA CCTTACTAAC AGCTGTGAAT
GAAGTTGATA ACGCCTTGAG CAATGAGAAC TCAATCAAGC GTCAGCAGCA ACATCTAGAG
AATGCTTTCG ATAGTGCAAA ACGAAGTTCA GCAAATTACC AAGTTAAATA TCGTCAGGGG
TTAGTGAATA TTCTCGATCT TCTCAGTGTA CAACAACAAG CTTTTGATAT TCAGACTCAG
CTTGTTACCG CCCAATATAA CCGTCTAGCG AACCGAATTG ATTTAGGCCT GGCACTAGGC
CTTGGAGTGT CTTCATGA
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| Protein sequence | MVLRSLQNRP LKLSSLCRMS VIGLVVSGLL GCSTTSRPSF DQLAQDAKTN YQTWSEVQQD
ALLANEITEL VAIPELTQLV SHALSQNPGL QQTAIAVKIA YQQQGLTNSA RLPQVSAGLT
SENSEDNEIS YKSDVTVSWE LDLWQKLSDE VSAAEMDLAA SSVNYQAAKD LLAANVMRSW
LKINLQQQII QIEEQRLESQ EANELFILER YRSGLGDLEG LDTARTNSET TRSTLESFRE
DLTRERRTLA LQLGYNANNK LIPISASYPE VIQPLASLPE QDLGRRPDLQ AAYFTILAQQ
YRTDIAYKSL LPSISLTGSL TEIASNPSDA LFGGSAWKLL SSITAPLFQG GKLRVDIEIA
KLTTEKDYWA YQETLLTAVN EVDNALSNEN SIKRQQQHLE NAFDSAKRSS ANYQVKYRQG
LVNILDLLSV QQQAFDIQTQ LVTAQYNRLA NRIDLGLALG LGVSS
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