| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1975 |
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| Symbol | |
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| ID | 5612488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2385553 |
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| End bp | 2388741 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932859 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001473712 |
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| Protein GI | 157375112 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.240252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACATA AATCTCAACT AGCAGCACAG CAACCGGGAA ACAATCCCTT AGAAGGAGTG
ATCACTTGGT TTGCTCAAAA CCCAGTAGCT GCAAACTTAC TACTGATTTC AATTTTAGCA
TTAGGTTTGT TTTCTCTTAC ATCACTCAGA AAAGAAGCCT TCCCTAGCAT TGAGCCTAAC
AAGGTGACGG TGTCGGTCAA CTATGACAGC GGAGATGCTA AACAAGCTGA AGAAGGTATC
GCGATAAAAA TTGAAGATGC GCTAGAAACC GTATCGGGTA TTAAGCGTAT CACCTCTAAA
TCCAATGCCT ATGGTTCGAC TGTCACCATT GAAAAAAAGA CGGGCTATCC GCTGGATGAC
TTACTGAACG ATGTCAAAAC CAATGTTGAT GCCATTTATA ATTTCCCTCT AGCTGCAGAG
AACCCTGTTA TCGATAAAGC AAGGAAAAAA GATCATGCAT TGTGGGTGCA GTTTTATGGT
GATGCCGGTA GGACCACGTT TCAGCAATTA GCAGAAAAGC TAAAAAATGA ATTGTTAGCA
CAATCTGAAA TAACAGATTT AGAGATAAAA GCCAAGGTCA ATCCTATGAT TTCGGTCGAA
GTCGATGAGA TCAAGTTACA AGCTTACGGA TTAACCTTAT CTGATGTCAC TGACGCTATT
AATGCCGAAT CTTTAACTCC AGTTAGCACT AGTTTACGTA ATAAGAATAA GACAGTACGA
CTAAAAGCAT CCGCACAGGC TTATCGACAG CTTGAATTTA GCCAGTTGCC GTTGATTACG
ACAACAGACG GCACCTTGAT TACATTAGGT GACGTCGCAT TGGTACAAGA TACCTTTGAA
GATGTTACCT ATAGTTTGTC CCGGTATAAT CAGCAACCAG GTATGGCGAT TGAAATCGTT
ATGGGTGAGC AGGGGGATTT GATTAAAGCC GTTGAACAGG CAAGCGATGT CGTAAAAAAA
TGGCAAACAA ATGGTGCATT ACCGGAAGGA GTATTTCTAG AGACGTGGAG TGATGAGAGT
ATACTGATTA AAGATCGTTT AGCATTGCTT GCTGACAATG CATTATCCGG TGTGGCTCTG
GTCTTTATCG TCCTTGCACT ATTTTTGAAT ATCCGCGTTG CCTTCTGGGT CGCTGCCGGA
ATACCGTTTG TTTTCTTCGG TACACTGTAT TTTATGACTG ATAGCTTTAT GGCGCTGAGC
ATTAATGAGT TAACCACCTT TGGTTTTATT ATGGCGCTCG GTATCGTTGT TGATGATGCA
GTGGTTGTTG GCGAGAGTAT TTATACAACC CGGAGAGAGG CAGAGGATTC ACTTGGTAGT
ACCGTCAAAG GTACCATGAA AGTTGCTATT CCGACGTTAT TTGGCGTACT GACGACGGTT
GCAGCATTTG CCTGTTTATC TAATGTAGCA GGTGATTTAG GCCAAATTTT TTCGCAGTTT
GCAGCAGTGG TCACTATCTG CTTACTATTG TCTATGGTGG AGTCAAAGCT GATTCTACCT
TGCCATTTAG CTCATGTTAA TACCCATAAA AGCCCCCCTA AAGGTATTTT GGGATCATGG
AGCCGTATTC AACATGGTGC AGATGCGGGT CTTGAATGGT TTAATAAGAA AGTGTATCGC
AACATGATTG AGTGGGCACT TAAACTTCGA TATGCCATCA TATTTGGTTT TATTACTGTG
TTTATACTCG TTATTGGTAT GCCAATGAAC GGCACTGTTC GTACTTCGTT CTTCCCAGAA
ATTGCAGGTG GTACGGTTAC TTCCAATTTG GTTATGCAAA ATGATGCTAG CTTTGGTCAA
ACTGATGCAA ATTTAAGAAC CATAGAAGCG GCCGCTATTC ACGCTGACTT ACTGTTACGT
GAAAACAAGG GCGTAGAAGA GACTCAAATT GGTAGTTTAC AGCTTATTGC TGATGCTGAT
AGCACTGGTA AAATTACTGT CGAGCTTATT GACAGTCCAG CATACAGCGC CGTCGAGTTT
AAAAATGAAT GGACACGTAT GAGTGGAGAA CTCGAGGGTG TTAAGAAGGT TAATTTTTTA
GCCTATAAGC ATATGGTTGA TAACTTTAAA GTCGAGTTGA AAGCTGGAGA CTATGCAACA
GTTAAACAAG CCGGCGACCA ACTTTTAGCT CGATTGAAAG CGATGCCTGC TGTCAGTGGT
ATTGATCATA ATTTGAGTCC AGGACAACCT CAATTTCGCT TTACGGTGAC AGAGCAAGGC
CGAGCTTTAG GTATGAACAG TGCGAGTTTG TCCAAGCAAG TGTTAGAGTC TTTCGGCGGC
GACATTGTTC AACGCTATCA ACGTAATACC GATGAGGTAA AGGTAAGGGT TCGCTATCCG
GAGCGAAAGC GCCAAACCTT AGCAGATATT ATGCAAGCGC GTGTACGCAC ACCAGCGGGT
ACCTTGGTGC CTTTGAGCGT GGTGGCAAAT ATTACGAGTG AGTATCAACA AGATGAAATC
ACACGTATTA ATAGCTTAAG AGCGGTATAT ATCACTGCCG CATTAGATAA AAACCAAATC
TCGCCAAGTG AGTTGGTTGC GCAGCTCGAA GCGACTCTAG TACCAGAGCT TGAGAAGCAA
TTTAGTGACC TAAATATCTA TTTTGCCGGG GAGGCTGAGC AAAAGGCTGA TACCATGGCG
TCTATGGCCG AGATGTTTAT GTTGGCCTTG CTCATTATAT ACGTGCTACT AGCGGTACCA
TTGAAATCCT ATACTCAACC CATACTTATT ATGCTTGCGA TTCCTTTTGG TATTGTTGGT
GCAATATTAG GCCACTGGTG GAATGATCTT ACGATTAGTA TTTTGTCTCT ATTCGGTATA
TTGGCATTAA GTGGTGTAGT GGTAAATGAC AGTTTGCTAT TGGTTTCTAG GTTTAATGAA
TTAATAAAAC AAAAATCGTT ATCGCTGCAT GATGCAATTG TAGAAGCTTG CACTAGTCGC
CTACGAGCCG TGTTCTTAAC CTCACTGACA ACATTCGTGG GATTATCACC TATTTTGGCT
GAAACCTCTT TGCAGGCACA GTTTCTTATC CCCGCAGCGG CTTCGCTGGG TTACGGGATC
GTATTTGCTA CTGTAATTAC TTTGGTATTG ATTCCTGCAT TACTCTTTAT TCAAGTTGAA
GTTGGTGTAT TGTTAAGTAC ATTAAAGGTT AACTTATTTA AAACGAGAAA ATTGGTGACT
AAATGCTAA
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| Protein sequence | MAHKSQLAAQ QPGNNPLEGV ITWFAQNPVA ANLLLISILA LGLFSLTSLR KEAFPSIEPN
KVTVSVNYDS GDAKQAEEGI AIKIEDALET VSGIKRITSK SNAYGSTVTI EKKTGYPLDD
LLNDVKTNVD AIYNFPLAAE NPVIDKARKK DHALWVQFYG DAGRTTFQQL AEKLKNELLA
QSEITDLEIK AKVNPMISVE VDEIKLQAYG LTLSDVTDAI NAESLTPVST SLRNKNKTVR
LKASAQAYRQ LEFSQLPLIT TTDGTLITLG DVALVQDTFE DVTYSLSRYN QQPGMAIEIV
MGEQGDLIKA VEQASDVVKK WQTNGALPEG VFLETWSDES ILIKDRLALL ADNALSGVAL
VFIVLALFLN IRVAFWVAAG IPFVFFGTLY FMTDSFMALS INELTTFGFI MALGIVVDDA
VVVGESIYTT RREAEDSLGS TVKGTMKVAI PTLFGVLTTV AAFACLSNVA GDLGQIFSQF
AAVVTICLLL SMVESKLILP CHLAHVNTHK SPPKGILGSW SRIQHGADAG LEWFNKKVYR
NMIEWALKLR YAIIFGFITV FILVIGMPMN GTVRTSFFPE IAGGTVTSNL VMQNDASFGQ
TDANLRTIEA AAIHADLLLR ENKGVEETQI GSLQLIADAD STGKITVELI DSPAYSAVEF
KNEWTRMSGE LEGVKKVNFL AYKHMVDNFK VELKAGDYAT VKQAGDQLLA RLKAMPAVSG
IDHNLSPGQP QFRFTVTEQG RALGMNSASL SKQVLESFGG DIVQRYQRNT DEVKVRVRYP
ERKRQTLADI MQARVRTPAG TLVPLSVVAN ITSEYQQDEI TRINSLRAVY ITAALDKNQI
SPSELVAQLE ATLVPELEKQ FSDLNIYFAG EAEQKADTMA SMAEMFMLAL LIIYVLLAVP
LKSYTQPILI MLAIPFGIVG AILGHWWNDL TISILSLFGI LALSGVVVND SLLLVSRFNE
LIKQKSLSLH DAIVEACTSR LRAVFLTSLT TFVGLSPILA ETSLQAQFLI PAAASLGYGI
VFATVITLVL IPALLFIQVE VGVLLSTLKV NLFKTRKLVT KC
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