| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1968 |
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| Symbol | |
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| ID | 5611459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2377699 |
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| End bp | 2378394 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932852 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_001473705 |
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| Protein GI | 157375105 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.264134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCAC TAGACACGCT TTACTTAAGC GCAGAATACC AACCCTTGAT AGCGACATCT
GATCTTCAGA TCTATGGATT TGAGGCACTG TCACGGTTTC GCGATCGACA TGGAGTGTCA
ACGCCACCAA ACATCATTTT TGAGCAGCTT CATAGCCAAA CGAGTCTACT TTCAAACATA
GAGATGAAAG CGAAACAATT CCAACTCGAG CACTCAGACC CTTCATTACC GCTGTTCATT
AATTTAGATC CCCATGCAAT AGAGAACAAC GGCGACCATA TGCTGGAGTT ATTGTCGACA
CGTGCCGATC TCACCGTTGA GATCATCGAA AACACCTGCA TCAACGATGC GAACCTATCG
ACCCGACTCG TTTCTCAACT TAAAGCCAAA CAGATAGCCG TTGCACTCGA TGACATAGGC
GCGCCCCACT CCATGCTATC TTTAGCGTTA TTGAGCCAGG TTAACGTATT AAAATTCGAC
ATCGAATGGC TGAATCAATC CAGAAGTGTT GAGCAGCAAC ATTTAATGAA AGCATTGATC
AAATTTGCAA AGGACAGCAA TAAAAAGACA GTCTTAGAGG GCGTCGAAAC AAAGGAACAA
CTCACACTGG CTCAAGAACT CGGCGTCGAT CTGGTGCAAG GCTTTCTGTT TAAACCTCAA
TTTCAATATG CCAACAGCTC TGTTAAGTTG ATTTAA
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| Protein sequence | MIALDTLYLS AEYQPLIATS DLQIYGFEAL SRFRDRHGVS TPPNIIFEQL HSQTSLLSNI
EMKAKQFQLE HSDPSLPLFI NLDPHAIENN GDHMLELLST RADLTVEIIE NTCINDANLS
TRLVSQLKAK QIAVALDDIG APHSMLSLAL LSQVNVLKFD IEWLNQSRSV EQQHLMKALI
KFAKDSNKKT VLEGVETKEQ LTLAQELGVD LVQGFLFKPQ FQYANSSVKL I
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