Gene Ssed_1965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1965 
Symbol 
ID5611456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2373615 
End bp2375639 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content47% 
IMG OID640932849 
Producttransglutaminase domain-containing protein 
Protein accessionYP_001473702 
Protein GI157375102 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1305] Transglutaminase-like enzymes, putative cysteine proteases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACATT CGAGTCAGGA AGAGATCATC TCCCGCCATA GCTTGCTGTG GCTGCTTATC 
GTTAATATCG CGGTTCTTGC GCCCCTGTAC GATAAACTCA CCCCATGGAG CTTGGGAATA
TGTGGGATCT GTCTTGTCTG GCGCTTTGGG ATCTTCATAG GAAAAGTCGC CAAGCCCCCC
AGGTATCTCG TTACGGCTCT GGCAATCGCA TCCGCGATTA CACTGGCACT CGTCACCTCA
GAGATAGGTT TACTGAACGG ACTCATCAAC CTGCTTATCT TAGGCTACGC CCTTAAGTAT
ATTGAGATGA GAAACAGGCG TGATGTCAGA ACCGTGGTAC TGGTAGGGTA TTTTCTTATC
GCCATCACCT TCATCGACCA GCAATCCATT TTCTATGCCG TTAATCTCAC CTTTGTCACC
GGGATAAACA CCTGCGTGTT GGTCAGCCTC TATAGAGAAG ATGTGAAATT AAAAGAGACG
GCCCGTATTG GCTTTAAACT TCTTCTGCAG AGCCTGCCTC TGGCTGCCCT ACTCTTCCTG
GTACTGCCCA GACTTCCTCC CCTTTGGATG GTGCCACAAC AGAAATCCAC TCAAACCGGC
TTATCAGATG AAGTTAGCTT CGGTGATATT ACTGAACTAA CACGGTCGGC TGCATTGGCA
TTCAGGGCCG AATTTTCAAT GTCCCCACCA AGCAATCAGC AACTCTACTG GCGAGCACTG
GTGATGGAAG ACTACGATGG CAGCCGGTGG ACGCAAAACT CGAGTATTAA AGATATCGAA
GATAATACGC CATTTACGAC CTCGAGACGG CAACAACCAG AAGGCTCCCC AATACAATAC
TCAGTGATCG CCGAACCGAG TAATCAACAT TGGTTATTTG GATTGGATGC CGCATTCAGT
AGTGATATCG GCATCATCAA CCTGCCCGAT TACCGTCTAT ATTCTGCAAG AACTGTCGAT
CAAAAGTTTC AATACCATGT AGACTCCTAT CCTCAATATG CAATGGATAA GACGCTAGAT
CCCACAGTCA GACTGCTTAA TTTGCGGCTG CCGGATGACA TTAATCCCCG TACCTTCGAG
TTGGCACAAT CCTTTAAGAA AGACTTGCCC GATCCGACAA CCAGACTCCG CGCCATGATG
AGATACTTCA CCGAACAACC CTACTTTTAT ACACTCACGC CTCCCCGGGT TGGGCCGCAA
CAGATTGATG ATTTCCTGTT CGAGAATAAA GCCGGTTTCT GTGTGCATTA CGCCAGTGCA
TTCACTTTTA TGGCCAGGGC CTCGGGCCTT CCGGCGCGTT TGGTAACCGG TTATCAAGGC
GGCGAATTTA ACCAAAGTGC CGGTTACCTG AGTATCTATC AATACATGGC ACATGCCTGG
ACTGAAGTAT GGATTGAGAA TAGAGGCTGG GTAAGATATG ACCCCACCGC CATGATCGCG
CCAGAGCGAG TACTCGAAGG TTTTGACGCC TATTTTCAAG CACAAGAGAG CTACCTGTTA
GACAGCCCAT TTAGCCCATT AAGACTGAGA GAATTTCCGC TTCTCAATGA ATTGAGGCTC
ACGCTGGCAA GTATTGATTA CTATTGGAGC GTTTGGGTTC TGGGCTTTGA CTCAAGCAAG
CAGGAGCAGA TCCTTCAAAA ATTATTAGGA GAAGTTACAC AGCAAAAAAT AGCCATTTTC
ATGCTGGTGA GTATCACCTT TATCGGCCTT GTTATTGCCT ATAGCGCGGG TCTGATCCAC
TTTCACAGAG ATAAAGACAG GGTCGCTTCA ACCTACCTTC ATATGTGTCA TTTACTCGAG
AAAAAGGGGG TAATAAGAGA TAAACAACAG GGGCCAACAG ATTTTTGCTC TATCGTGGAG
GACGCCTTTC CCGGTATCGC AACCGATTTT AGACGCTTCA CTCACTATTA TGTGGCACTT
AAATACCAAC CCCTCTCCTC ACACAGAAGA AAAAAGACAG TCAAACTGTT TTCAAATCAA
TTCAGAAAGT TGAGATTAAA AATCTTAAAA GGTAAGACAA GCTAA
 
Protein sequence
MTHSSQEEII SRHSLLWLLI VNIAVLAPLY DKLTPWSLGI CGICLVWRFG IFIGKVAKPP 
RYLVTALAIA SAITLALVTS EIGLLNGLIN LLILGYALKY IEMRNRRDVR TVVLVGYFLI
AITFIDQQSI FYAVNLTFVT GINTCVLVSL YREDVKLKET ARIGFKLLLQ SLPLAALLFL
VLPRLPPLWM VPQQKSTQTG LSDEVSFGDI TELTRSAALA FRAEFSMSPP SNQQLYWRAL
VMEDYDGSRW TQNSSIKDIE DNTPFTTSRR QQPEGSPIQY SVIAEPSNQH WLFGLDAAFS
SDIGIINLPD YRLYSARTVD QKFQYHVDSY PQYAMDKTLD PTVRLLNLRL PDDINPRTFE
LAQSFKKDLP DPTTRLRAMM RYFTEQPYFY TLTPPRVGPQ QIDDFLFENK AGFCVHYASA
FTFMARASGL PARLVTGYQG GEFNQSAGYL SIYQYMAHAW TEVWIENRGW VRYDPTAMIA
PERVLEGFDA YFQAQESYLL DSPFSPLRLR EFPLLNELRL TLASIDYYWS VWVLGFDSSK
QEQILQKLLG EVTQQKIAIF MLVSITFIGL VIAYSAGLIH FHRDKDRVAS TYLHMCHLLE
KKGVIRDKQQ GPTDFCSIVE DAFPGIATDF RRFTHYYVAL KYQPLSSHRR KKTVKLFSNQ
FRKLRLKILK GKTS