| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1965 |
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| Symbol | |
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| ID | 5611456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2373615 |
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| End bp | 2375639 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932849 |
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| Product | transglutaminase domain-containing protein |
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| Protein accession | YP_001473702 |
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| Protein GI | 157375102 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACATT CGAGTCAGGA AGAGATCATC TCCCGCCATA GCTTGCTGTG GCTGCTTATC
GTTAATATCG CGGTTCTTGC GCCCCTGTAC GATAAACTCA CCCCATGGAG CTTGGGAATA
TGTGGGATCT GTCTTGTCTG GCGCTTTGGG ATCTTCATAG GAAAAGTCGC CAAGCCCCCC
AGGTATCTCG TTACGGCTCT GGCAATCGCA TCCGCGATTA CACTGGCACT CGTCACCTCA
GAGATAGGTT TACTGAACGG ACTCATCAAC CTGCTTATCT TAGGCTACGC CCTTAAGTAT
ATTGAGATGA GAAACAGGCG TGATGTCAGA ACCGTGGTAC TGGTAGGGTA TTTTCTTATC
GCCATCACCT TCATCGACCA GCAATCCATT TTCTATGCCG TTAATCTCAC CTTTGTCACC
GGGATAAACA CCTGCGTGTT GGTCAGCCTC TATAGAGAAG ATGTGAAATT AAAAGAGACG
GCCCGTATTG GCTTTAAACT TCTTCTGCAG AGCCTGCCTC TGGCTGCCCT ACTCTTCCTG
GTACTGCCCA GACTTCCTCC CCTTTGGATG GTGCCACAAC AGAAATCCAC TCAAACCGGC
TTATCAGATG AAGTTAGCTT CGGTGATATT ACTGAACTAA CACGGTCGGC TGCATTGGCA
TTCAGGGCCG AATTTTCAAT GTCCCCACCA AGCAATCAGC AACTCTACTG GCGAGCACTG
GTGATGGAAG ACTACGATGG CAGCCGGTGG ACGCAAAACT CGAGTATTAA AGATATCGAA
GATAATACGC CATTTACGAC CTCGAGACGG CAACAACCAG AAGGCTCCCC AATACAATAC
TCAGTGATCG CCGAACCGAG TAATCAACAT TGGTTATTTG GATTGGATGC CGCATTCAGT
AGTGATATCG GCATCATCAA CCTGCCCGAT TACCGTCTAT ATTCTGCAAG AACTGTCGAT
CAAAAGTTTC AATACCATGT AGACTCCTAT CCTCAATATG CAATGGATAA GACGCTAGAT
CCCACAGTCA GACTGCTTAA TTTGCGGCTG CCGGATGACA TTAATCCCCG TACCTTCGAG
TTGGCACAAT CCTTTAAGAA AGACTTGCCC GATCCGACAA CCAGACTCCG CGCCATGATG
AGATACTTCA CCGAACAACC CTACTTTTAT ACACTCACGC CTCCCCGGGT TGGGCCGCAA
CAGATTGATG ATTTCCTGTT CGAGAATAAA GCCGGTTTCT GTGTGCATTA CGCCAGTGCA
TTCACTTTTA TGGCCAGGGC CTCGGGCCTT CCGGCGCGTT TGGTAACCGG TTATCAAGGC
GGCGAATTTA ACCAAAGTGC CGGTTACCTG AGTATCTATC AATACATGGC ACATGCCTGG
ACTGAAGTAT GGATTGAGAA TAGAGGCTGG GTAAGATATG ACCCCACCGC CATGATCGCG
CCAGAGCGAG TACTCGAAGG TTTTGACGCC TATTTTCAAG CACAAGAGAG CTACCTGTTA
GACAGCCCAT TTAGCCCATT AAGACTGAGA GAATTTCCGC TTCTCAATGA ATTGAGGCTC
ACGCTGGCAA GTATTGATTA CTATTGGAGC GTTTGGGTTC TGGGCTTTGA CTCAAGCAAG
CAGGAGCAGA TCCTTCAAAA ATTATTAGGA GAAGTTACAC AGCAAAAAAT AGCCATTTTC
ATGCTGGTGA GTATCACCTT TATCGGCCTT GTTATTGCCT ATAGCGCGGG TCTGATCCAC
TTTCACAGAG ATAAAGACAG GGTCGCTTCA ACCTACCTTC ATATGTGTCA TTTACTCGAG
AAAAAGGGGG TAATAAGAGA TAAACAACAG GGGCCAACAG ATTTTTGCTC TATCGTGGAG
GACGCCTTTC CCGGTATCGC AACCGATTTT AGACGCTTCA CTCACTATTA TGTGGCACTT
AAATACCAAC CCCTCTCCTC ACACAGAAGA AAAAAGACAG TCAAACTGTT TTCAAATCAA
TTCAGAAAGT TGAGATTAAA AATCTTAAAA GGTAAGACAA GCTAA
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| Protein sequence | MTHSSQEEII SRHSLLWLLI VNIAVLAPLY DKLTPWSLGI CGICLVWRFG IFIGKVAKPP
RYLVTALAIA SAITLALVTS EIGLLNGLIN LLILGYALKY IEMRNRRDVR TVVLVGYFLI
AITFIDQQSI FYAVNLTFVT GINTCVLVSL YREDVKLKET ARIGFKLLLQ SLPLAALLFL
VLPRLPPLWM VPQQKSTQTG LSDEVSFGDI TELTRSAALA FRAEFSMSPP SNQQLYWRAL
VMEDYDGSRW TQNSSIKDIE DNTPFTTSRR QQPEGSPIQY SVIAEPSNQH WLFGLDAAFS
SDIGIINLPD YRLYSARTVD QKFQYHVDSY PQYAMDKTLD PTVRLLNLRL PDDINPRTFE
LAQSFKKDLP DPTTRLRAMM RYFTEQPYFY TLTPPRVGPQ QIDDFLFENK AGFCVHYASA
FTFMARASGL PARLVTGYQG GEFNQSAGYL SIYQYMAHAW TEVWIENRGW VRYDPTAMIA
PERVLEGFDA YFQAQESYLL DSPFSPLRLR EFPLLNELRL TLASIDYYWS VWVLGFDSSK
QEQILQKLLG EVTQQKIAIF MLVSITFIGL VIAYSAGLIH FHRDKDRVAS TYLHMCHLLE
KKGVIRDKQQ GPTDFCSIVE DAFPGIATDF RRFTHYYVAL KYQPLSSHRR KKTVKLFSNQ
FRKLRLKILK GKTS
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