Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1965 |
Symbol | |
ID | 5611456 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2373615 |
End bp | 2375639 |
Gene Length | 2025 bp |
Protein Length | 674 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932849 |
Product | transglutaminase domain-containing protein |
Protein accession | YP_001473702 |
Protein GI | 157375102 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACACATT CGAGTCAGGA AGAGATCATC TCCCGCCATA GCTTGCTGTG GCTGCTTATC GTTAATATCG CGGTTCTTGC GCCCCTGTAC GATAAACTCA CCCCATGGAG CTTGGGAATA TGTGGGATCT GTCTTGTCTG GCGCTTTGGG ATCTTCATAG GAAAAGTCGC CAAGCCCCCC AGGTATCTCG TTACGGCTCT GGCAATCGCA TCCGCGATTA CACTGGCACT CGTCACCTCA GAGATAGGTT TACTGAACGG ACTCATCAAC CTGCTTATCT TAGGCTACGC CCTTAAGTAT ATTGAGATGA GAAACAGGCG TGATGTCAGA ACCGTGGTAC TGGTAGGGTA TTTTCTTATC GCCATCACCT TCATCGACCA GCAATCCATT TTCTATGCCG TTAATCTCAC CTTTGTCACC GGGATAAACA CCTGCGTGTT GGTCAGCCTC TATAGAGAAG ATGTGAAATT AAAAGAGACG GCCCGTATTG GCTTTAAACT TCTTCTGCAG AGCCTGCCTC TGGCTGCCCT ACTCTTCCTG GTACTGCCCA GACTTCCTCC CCTTTGGATG GTGCCACAAC AGAAATCCAC TCAAACCGGC TTATCAGATG AAGTTAGCTT CGGTGATATT ACTGAACTAA CACGGTCGGC TGCATTGGCA TTCAGGGCCG AATTTTCAAT GTCCCCACCA AGCAATCAGC AACTCTACTG GCGAGCACTG GTGATGGAAG ACTACGATGG CAGCCGGTGG ACGCAAAACT CGAGTATTAA AGATATCGAA GATAATACGC CATTTACGAC CTCGAGACGG CAACAACCAG AAGGCTCCCC AATACAATAC TCAGTGATCG CCGAACCGAG TAATCAACAT TGGTTATTTG GATTGGATGC CGCATTCAGT AGTGATATCG GCATCATCAA CCTGCCCGAT TACCGTCTAT ATTCTGCAAG AACTGTCGAT CAAAAGTTTC AATACCATGT AGACTCCTAT CCTCAATATG CAATGGATAA GACGCTAGAT CCCACAGTCA GACTGCTTAA TTTGCGGCTG CCGGATGACA TTAATCCCCG TACCTTCGAG TTGGCACAAT CCTTTAAGAA AGACTTGCCC GATCCGACAA CCAGACTCCG CGCCATGATG AGATACTTCA CCGAACAACC CTACTTTTAT ACACTCACGC CTCCCCGGGT TGGGCCGCAA CAGATTGATG ATTTCCTGTT CGAGAATAAA GCCGGTTTCT GTGTGCATTA CGCCAGTGCA TTCACTTTTA TGGCCAGGGC CTCGGGCCTT CCGGCGCGTT TGGTAACCGG TTATCAAGGC GGCGAATTTA ACCAAAGTGC CGGTTACCTG AGTATCTATC AATACATGGC ACATGCCTGG ACTGAAGTAT GGATTGAGAA TAGAGGCTGG GTAAGATATG ACCCCACCGC CATGATCGCG CCAGAGCGAG TACTCGAAGG TTTTGACGCC TATTTTCAAG CACAAGAGAG CTACCTGTTA GACAGCCCAT TTAGCCCATT AAGACTGAGA GAATTTCCGC TTCTCAATGA ATTGAGGCTC ACGCTGGCAA GTATTGATTA CTATTGGAGC GTTTGGGTTC TGGGCTTTGA CTCAAGCAAG CAGGAGCAGA TCCTTCAAAA ATTATTAGGA GAAGTTACAC AGCAAAAAAT AGCCATTTTC ATGCTGGTGA GTATCACCTT TATCGGCCTT GTTATTGCCT ATAGCGCGGG TCTGATCCAC TTTCACAGAG ATAAAGACAG GGTCGCTTCA ACCTACCTTC ATATGTGTCA TTTACTCGAG AAAAAGGGGG TAATAAGAGA TAAACAACAG GGGCCAACAG ATTTTTGCTC TATCGTGGAG GACGCCTTTC CCGGTATCGC AACCGATTTT AGACGCTTCA CTCACTATTA TGTGGCACTT AAATACCAAC CCCTCTCCTC ACACAGAAGA AAAAAGACAG TCAAACTGTT TTCAAATCAA TTCAGAAAGT TGAGATTAAA AATCTTAAAA GGTAAGACAA GCTAA
|
Protein sequence | MTHSSQEEII SRHSLLWLLI VNIAVLAPLY DKLTPWSLGI CGICLVWRFG IFIGKVAKPP RYLVTALAIA SAITLALVTS EIGLLNGLIN LLILGYALKY IEMRNRRDVR TVVLVGYFLI AITFIDQQSI FYAVNLTFVT GINTCVLVSL YREDVKLKET ARIGFKLLLQ SLPLAALLFL VLPRLPPLWM VPQQKSTQTG LSDEVSFGDI TELTRSAALA FRAEFSMSPP SNQQLYWRAL VMEDYDGSRW TQNSSIKDIE DNTPFTTSRR QQPEGSPIQY SVIAEPSNQH WLFGLDAAFS SDIGIINLPD YRLYSARTVD QKFQYHVDSY PQYAMDKTLD PTVRLLNLRL PDDINPRTFE LAQSFKKDLP DPTTRLRAMM RYFTEQPYFY TLTPPRVGPQ QIDDFLFENK AGFCVHYASA FTFMARASGL PARLVTGYQG GEFNQSAGYL SIYQYMAHAW TEVWIENRGW VRYDPTAMIA PERVLEGFDA YFQAQESYLL DSPFSPLRLR EFPLLNELRL TLASIDYYWS VWVLGFDSSK QEQILQKLLG EVTQQKIAIF MLVSITFIGL VIAYSAGLIH FHRDKDRVAS TYLHMCHLLE KKGVIRDKQQ GPTDFCSIVE DAFPGIATDF RRFTHYYVAL KYQPLSSHRR KKTVKLFSNQ FRKLRLKILK GKTS
|
| |