| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1949 |
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| Symbol | |
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| ID | 5611297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2351145 |
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| End bp | 2352920 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640932833 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473686 |
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| Protein GI | 157375086 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0433] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0198578 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACAC AAGAGTATGT AGTATCAACG GAAGATGACT GTTATATAGG CAGAGTGGCT
AGTGTCGATA CAAATCGAGC TCTCATATTA GCTGAATCAC CAGAAGTTAT TCAAACACTT
ACAGTTTCAG ATTTAGTTGC TATTCAAGGA GCTACACCTC AAGAGTTTTT GGTTGGCATC
ATTGAGAAAG TAAAACGAAG TATCGGTAGC CCTATATTAA TAGAACCAGA GGATGAAGAA
AGTGAAGAGG AAGACTTTGA TGTTGTCGTT GATCATGACG TTGTTCAAGT TGCACTCATT
GGTACTTATT GGGAGGTTCT TGGAGACAAT CGTCAAATTT TTAAGCGTGG AGCAAAGTAC
TTTCCAAGAG TTGATAAAAA AGTTTTTTTA ATAAAAGAAG ACAGTCTTGA AAACTTGATG
TCAGTTGTTG CTAGCGATAC TCCAGAGGAA ATTCAATTAG TACTTGGTAC CTATGGGAAT
ACCCAATCAA AAGCTGTTGC AAATGGCGAC AAGCTTTTTC AACGACACGC AGCTCTCCTT
GGTAGCACTG GTTCAGGGAA AAGCTGGACA GTAGCATCAC TTCTAGAGCA AGCCGCAAAA
TTAGAACATA CAAATATTAT TCTTTTTGAT CTTCATGGTG AGTATAAAAC TCTAACTAGA
GAATGTGTTG AAGATGGGAA GGAACCAATA GCAGAATATT ATAAAATTGC AGGGCCTGCT
GATATTGAAA ATAAAAATTC TAGCTCTGTA TTTGTTCCAC ACTGGTTGCT TAATAAAGAT
GAAATGTTAG CTTTGCTATT AGATCGGTCT GATAATAACG CGCCTAATCA GTCATCTCGA
TTTACTCACC ACGTAAGAGA GTTAAAACAA CAATACCTAG TTGAGAATGA ACTCACAGAA
CTTACTGATG GATTAACGAT TGATTCACCT ATTCCATATT CAATTCGACA CCTTTTAGAC
CGACTATCTA CTGATGATAA TGGTACAAAG CCAGGAGCAA ATGCAAAGCC TGTAAAGGGG
GATTGGAATG GGAAGCTAAC AAGATTTATT GGCCGACTTG AAACAAAAAT AGACGATAAG
AGAAACTCGT TTTTATTTAA ATCTCCAAAT GGATCAAATG AGTACGAATG GCTAGCTACT
TATGCAAACC AGTTTCTGGA AACAAAATCG GACTCATTCG GTATAAAAGT TATAGATTTT
TCAGAAGTTC CTTCTGACAT ATTACCAATA GTAATTGGTG TGTTAACTCG ATTCTTGTAT
AATGTACAGT TTTGGAGAGC AGAAGAAGAT CGAACCCCTA TTGCTTTTGT ATGCGATGAA
GCGCATATAT ATTTACCAAC AAAAGATGCT AGTGATGCTG ACTCTAGAAT TGCTTTAGAT
ACTTTTGAAA AAGTAGCTAA AGAAGGCAGA AAGTACGGAG TGTCTTTGCT AGTTGTTAGT
CAGCGACCTT CAGATGTCAG CCGAACTATT TTGAGCCAAT GTAACAACCT TATCGCATTA
AGGCTAAGCA ACCCCCAAGA TCAACAAGTC GTACATAAAA TGATGCCTGA TTCATTAAGC
TCTCTGACAT CTGTTTTACC CATCCTGGAT ACTGGTGAGG CAGTAGTATT AGGTGACGCA
GTATTGCTGC CGTCTCGTAT AAAGTTAAAT AAGCCTAACC TTGAACCAGC AAGTGCTACT
AAAGACTTTT GGCGTGATTG GTCTAGCAAG GAATCTAAAG GAGACTCTAT AATTTTTGCG
GTTGAATCAT TGCGACGACA ATCGAGGTTA AGATAG
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| Protein sequence | MTTQEYVVST EDDCYIGRVA SVDTNRALIL AESPEVIQTL TVSDLVAIQG ATPQEFLVGI
IEKVKRSIGS PILIEPEDEE SEEEDFDVVV DHDVVQVALI GTYWEVLGDN RQIFKRGAKY
FPRVDKKVFL IKEDSLENLM SVVASDTPEE IQLVLGTYGN TQSKAVANGD KLFQRHAALL
GSTGSGKSWT VASLLEQAAK LEHTNIILFD LHGEYKTLTR ECVEDGKEPI AEYYKIAGPA
DIENKNSSSV FVPHWLLNKD EMLALLLDRS DNNAPNQSSR FTHHVRELKQ QYLVENELTE
LTDGLTIDSP IPYSIRHLLD RLSTDDNGTK PGANAKPVKG DWNGKLTRFI GRLETKIDDK
RNSFLFKSPN GSNEYEWLAT YANQFLETKS DSFGIKVIDF SEVPSDILPI VIGVLTRFLY
NVQFWRAEED RTPIAFVCDE AHIYLPTKDA SDADSRIALD TFEKVAKEGR KYGVSLLVVS
QRPSDVSRTI LSQCNNLIAL RLSNPQDQQV VHKMMPDSLS SLTSVLPILD TGEAVVLGDA
VLLPSRIKLN KPNLEPASAT KDFWRDWSSK ESKGDSIIFA VESLRRQSRL R
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