| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1940 |
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| Symbol | |
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| ID | 5610333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2339033 |
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| End bp | 2340037 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640932826 |
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| Product | sugar-binding protein, putative |
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| Protein accession | YP_001473679 |
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| Protein GI | 157375079 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGATTAT CGATAATACT TTTAGTATTT ACCATGTTGC CACTATTTTC AGCCAGTGGG
AAAGATCTTA AGTTCGCAGT TGTTCCTAAG TACCACAGTG TTTTTTTTGA ACAGAGCAAA
CATGGTTGTA AGGATGCAGC CACTCAAATA AAAGGCGTCG AGTGTATATA TCGGGGCCCT
GAAAAAGCGA GTGTTAGAGT ACAGGATCAG ATTATTTCAC AACTGATCGA TGAGGGGGTT
GATGGCATCG CTGTAGCCGT TACACAGTCT AAATTCCTCG CAGAAAATAG TATTCAAAAA
GCACGAAATG CTGGAATACC TATTGTCACT TATGACTCTG ATTTTGACCT TCAAACCTTG
GAAAAGTATA AAAAGATACG CTCAACTTAT ATAGGGACAG ATAATTTTCA GTTTGGTAGA
GCTTTAGGGG AACAACTAAA AAAACAGCGC CCCAATGGAG GAACATTAAT TATTCAAACT
GGACGCCCAG ACTCTCCAAA TTTGAATCTT AGAATTATGG GGATCCGTTC TGCTCTGTCT
GGCAAACAAT ATAATACTCC TCCCGGGAAA ATGCTCCTAA ATGATAGTGG CTGGACTGAA
GTAAGAGAGC CTTTTATTAA TTTTGATCAG CTTTCAAGGG CGGTAAAGCA GATGGAGTCA
GTGGTACAGG GAAGGCGATT AAAAGCGGAC TCCTTTATTG CCGTTGGTGG TTGGCCTCAA
AATGATGAAG CCCTTTATCG AAAAATGATC GCCCCTTTTA AAGAGAAGCT TGAGCGTAAA
GAGGTGATAG TTGTTATCTC TGATGCATCA GATCAGCAGT TAATCATGTT ACGAGACCAG
CTTGCTCATG CCAATGTTGG CCAAAACCCT TATGAGATGG GAAGGCAAGC CATTTTAACC
CTGCATAATA TTGTAAAAAA TCTAGATTAC GATGAGTTTA TTCATACCCC TATTAATTTG
TGTACCCGGG AAAACTACAC TAGCTGCACC CAACACAATT TATAA
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| Protein sequence | MRLSIILLVF TMLPLFSASG KDLKFAVVPK YHSVFFEQSK HGCKDAATQI KGVECIYRGP
EKASVRVQDQ IISQLIDEGV DGIAVAVTQS KFLAENSIQK ARNAGIPIVT YDSDFDLQTL
EKYKKIRSTY IGTDNFQFGR ALGEQLKKQR PNGGTLIIQT GRPDSPNLNL RIMGIRSALS
GKQYNTPPGK MLLNDSGWTE VREPFINFDQ LSRAVKQMES VVQGRRLKAD SFIAVGGWPQ
NDEALYRKMI APFKEKLERK EVIVVISDAS DQQLIMLRDQ LAHANVGQNP YEMGRQAILT
LHNIVKNLDY DEFIHTPINL CTRENYTSCT QHNL
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