| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1937 |
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| Symbol | |
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| ID | 5611324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2332461 |
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| End bp | 2336024 |
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| Gene Length | 3564 bp |
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| Protein Length | 1187 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932823 |
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| Product | exodeoxyribonuclease V, gamma subunit |
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| Protein accession | YP_001473676 |
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| Protein GI | 157375076 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1330] Exonuclease V gamma subunit |
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| TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTATC TTGTACAGTC TAATCGAATG GAAGCACTCT CGGCCCAACT CGCGACCGAG
CTACAGACGC CAATTCCCGG TATGCCACTG TTAATGCCCG AGCAGGTGTT AGTCCAAAGC
CCCGGCATGT CCACCTGGCT GAGACTAGAG ATTGCAAGAC AGAACAAGAT AGCCGCGGCG
CTTGAATTTC CGCTGCCCTC AAGCTTTATC TGGCAGCTGT GCCACACCCT GTTGCCCGAT
GTGCCCAAGG AAAATGCCTT TACCAAGCCC TCCATGACCT GGAAGCTGAT GGAGTTGCTG
CCGGAGCTAC TGCAGATCGA TGAGTTTGCG CCGCTTAACA ACTATCTCAA TGCTGCTAAC
TGCCCGGATG AAGCGACAGA GGCTTTACCG GAGGATCCAT TAAAACTGTT TCAACTGTGC
GGGCAAATAG CCGATATCTT CGATCAATAC CTGGTCTATC GTCCCGACTG GATAGCCGCA
TGGGAAGCCA ATGAGCCGAC CCTGCCGCCT AAAGATGATA AATTATCTCC GGCCCAGGCC
TGGCAACCCA TCTTGTGGCG CGCCCTTATC GAATTTAATA ACCTGCGTCT CAACAAGAGT
CGCTACCACA GGGCTAACCT GCATCAGTCG CTGTTTGATG CACTCGATGA CCCCGATACC
TGCCTCGATG GTCTACCCAG ACGGTTATTC GTATTCGGTA TCTCATCCAT GGCGCCTCAA
ACCTTAGATG TGCTCTATCA TCTGGCTAAG CGTATCGATG TGATCATGCT GAATTTAAGT
CCCTGTCAGC ACTACTGGGG CGATATTGTC GACCCTCGTT TACGCGCTCG TATGGCGCTT
GAATACGCCA ACAGGAATAA ACTCGAAGCC CTATGGGAAG ATAAGCTCGA GGTGGGTAAC
CCCCTGCTCG CCAATAACGG TAAGATGGGG CGTGAACTCC TGGACTTGAT ACTGGAGCTA
CCGGAGGAGC ACACCAACTT TAATTTCGAG TGTTACCAAG ACCCGCTGGA AAGTGCACCT
CAGACACTGC TTCGTGGCGT TCAGCACGAC ATTCTCGAAC TCAGTACCCG CAACAGAAGC
TTAGGCCCCG ATGCCTCTCT GTATCTGACA CTGGATGATC GCCGCGTGCT CACTAAAGCT
GACGACTCGC TGACACTTCG CAGTTGTCAC AGTCCACTGC GTGAAATCGA GACCCTGCAC
GATCACCTGC TCGAGATGTT GTCCCGTGAA CCTGCTGACC CAAGCGATCC CCTGCTTGCA
AAAGATATCG TCATCATGCT GCCGGATGTG GCAGCTTACG CGCCTTATAT CGATGCGGTG
TTCTCGGCCA AACAGGGCGC TCACTACATC CCTTACGCCA TCGCCGATCG CGGCGCGGCG
CAGGAATCGC CCCTGATCAA CAGCTTCCTG CATATTCTGG CCATCAATCA GAGTCGCTTC
GCCCTGACCG ATATCTTAGG GATCTTAGAG GTGCCTGCGG TACTCAGACG ATTCGAGCTC
GATGATGAAG CCCTCTCCAT GATACGCCAC TGGCTCGAAC AAGCCGGCGT GCGTTGGGGG
CGGGATGAAA ACAGCCGTGC AGCCCAATCT ATGCCCGCAT TCGATAAGAA CTCCTGGGCC
TTTGGAATCA AGCGTCTGAT CTTAGGCTAC GCCTTCAGCG ACGATGCTGA ACTTTATCAT
GACACCCTGC TGGTCGAAGG CATCGAAGGA CAATCGGCTC AGGCCCTGGG TAAACTACTC
AACTTCATCG AAACCTTAGA TGAGTATCAG CAGCAACTCG CTCAAAATTG CTCAATAGAG
GAGCGCATGA GTCAGTTAGC TCAGCTTCTC GAAGACTTTT ATGAGGTCGA TGATGAGGAG
CAACAACAGC TGCAAGCGAT ACGCGAGGCC ATCAGCAAGC TTAAAACTGA GCTCGCCGAT
TCCGGACAAG TCACACCGCT GAATACTCAG GTGCTGCAAA ACTGGTTTAA CAGCACCTTG
AGTGAATCCC GTGTCGGCCA ACGTTATCTG GCCGGTAGCG TCAATTTTTG TACCTTGATG
CCAATGCGCT CCATTCCCTT TAAATTGGTG TGCTTAGTCG GCATGAATGA TGGGATCTAC
CCAAGGGTAC AGCACCCGGT CGGTTTCGAT CTTGTGGCCC AGTTCGGACC CCGTAAAGGC
GATCGTTCAC GTCGCTTAGA TGACAGATAC CTGTTTTTAG AGGCGATACT CTCGGCCAGA
GAGCAACTCT ACATCAGCTA TATCGGCCAC AGTGAGCGCG ATAACTCGGA ACGGATCCCC
TCCATGTTGG TCTCAGAGTT GGTCGAATAT TGTCAGCTAT GTTATCTACC CGAGGGAGAT
CTTCACAATC CAGACAATGA GCCCGATATT CCAGCCATCG AGAAAGCAAT CCATAAGCAG
TTATTGATAG AACAACCTCT ACAGCCTTTC GATGAGCGGC TTTACTTGCC TGACAATGGT
GATGACCCCC AACTTAAACA AAGTTATTCC GCCCAGTGGT GTCCGGCAAG AACGAGCGAT
AATAGCGCTG AAACACCCCG CTTTATCGAA CCTGGTCAAA AAATTGAACA AGAGAGTCTG
GCATCGCCTT GCGTAGAGGA GAACGAGCTT GAGGTCTCGG CGCTTATCCG TTTCTTCAGA
AACCCGGCGC AATACTTTTT CAATCGAAGC CTCAAGGTCG ACTTAGGCCT GAACATTCAA
GCCGATGATA ACGATGAGCC CTTCAGTCTG AACGCGCTCG AGCGGTATAA ACTGCAGGCA
AACTTACTCG ATAACGCCAT ATCTCAAGGT TTAGAGCTCC CGGGCGAAGA GCTGTTGCAA
CGATTAAAGG CCAGTGGCGA GCTGCCCCTG AAGCCTTTCG ATGATCTCCT GCTTAACCAG
TATCTGCATG ACATTAAGCC CTTAATTGGC CGGGCGATCT ATCTTCAGGG TGAGAACCAA
CACTCACTGG ATATTGAGCT GCCCTTTGCT CTGGGCGATG GCACAGGCAA TACCATCACT
GAGCCCGTCA CATTAGTGGG GCGAATCGAT GATCTCTGCG CTAAGGGGCT GGTCAACTAT
CGACCCGGCA CCGCCAATGG CCGGGATCTG ATTAGAGTCT ACCTAAGACA TCTTTGTATA
AGTGCTATGG GGACAGATGC TAAAGAGTCT GCATCCCGAA GCGATAAACC ACATATCAGC
TACCTTCTAG ATATCGGCCA CTTTCATGCC TTCCATGGCG TCGCGCCCGA GCAGGCGAAC
GTGCAGCTGA GTCTATGGCT GAGTTATTTC CAATCGGGAC AAATCCATCC CTTGATGTTT
ATGCCCAGAA CCGCCCTCGC CTATGTCGAA GCCGAGGGGG ATCACAGCGA TAAACTCAAG
GAAGCTCAAA GCCAATGGAA AGATGAACAG AGCCAACTCG GTGAAGGCTT CGAGCCTCAT
TACCAGCGTC TGTTTAGTTT CCCTGAAGAT TTCAAAGAAG ATGAGTTTGG ACAGGTTGCC
ATGTCACTGC TAAGCCCGAT GCTCAGCCTC TATCACAAAG ATAAGCTCAG CGAGCTTGCA
AGTTTCGTCG AAGGAGGCTG TTAA
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| Protein sequence | MLYLVQSNRM EALSAQLATE LQTPIPGMPL LMPEQVLVQS PGMSTWLRLE IARQNKIAAA
LEFPLPSSFI WQLCHTLLPD VPKENAFTKP SMTWKLMELL PELLQIDEFA PLNNYLNAAN
CPDEATEALP EDPLKLFQLC GQIADIFDQY LVYRPDWIAA WEANEPTLPP KDDKLSPAQA
WQPILWRALI EFNNLRLNKS RYHRANLHQS LFDALDDPDT CLDGLPRRLF VFGISSMAPQ
TLDVLYHLAK RIDVIMLNLS PCQHYWGDIV DPRLRARMAL EYANRNKLEA LWEDKLEVGN
PLLANNGKMG RELLDLILEL PEEHTNFNFE CYQDPLESAP QTLLRGVQHD ILELSTRNRS
LGPDASLYLT LDDRRVLTKA DDSLTLRSCH SPLREIETLH DHLLEMLSRE PADPSDPLLA
KDIVIMLPDV AAYAPYIDAV FSAKQGAHYI PYAIADRGAA QESPLINSFL HILAINQSRF
ALTDILGILE VPAVLRRFEL DDEALSMIRH WLEQAGVRWG RDENSRAAQS MPAFDKNSWA
FGIKRLILGY AFSDDAELYH DTLLVEGIEG QSAQALGKLL NFIETLDEYQ QQLAQNCSIE
ERMSQLAQLL EDFYEVDDEE QQQLQAIREA ISKLKTELAD SGQVTPLNTQ VLQNWFNSTL
SESRVGQRYL AGSVNFCTLM PMRSIPFKLV CLVGMNDGIY PRVQHPVGFD LVAQFGPRKG
DRSRRLDDRY LFLEAILSAR EQLYISYIGH SERDNSERIP SMLVSELVEY CQLCYLPEGD
LHNPDNEPDI PAIEKAIHKQ LLIEQPLQPF DERLYLPDNG DDPQLKQSYS AQWCPARTSD
NSAETPRFIE PGQKIEQESL ASPCVEENEL EVSALIRFFR NPAQYFFNRS LKVDLGLNIQ
ADDNDEPFSL NALERYKLQA NLLDNAISQG LELPGEELLQ RLKASGELPL KPFDDLLLNQ
YLHDIKPLIG RAIYLQGENQ HSLDIELPFA LGDGTGNTIT EPVTLVGRID DLCAKGLVNY
RPGTANGRDL IRVYLRHLCI SAMGTDAKES ASRSDKPHIS YLLDIGHFHA FHGVAPEQAN
VQLSLWLSYF QSGQIHPLMF MPRTALAYVE AEGDHSDKLK EAQSQWKDEQ SQLGEGFEPH
YQRLFSFPED FKEDEFGQVA MSLLSPMLSL YHKDKLSELA SFVEGGC
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