| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1935 |
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| Symbol | |
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| ID | 5611322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2326656 |
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| End bp | 2328707 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932821 |
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| Product | exodeoxyribonuclease V |
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| Protein accession | YP_001473674 |
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| Protein GI | 157375074 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.280429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCAGT CAACACAGCC AATCAAAGCC CTGCTGAAAG TCTGGGAGTC TGAGCGATTA
ATTACACCAC TGGACAGACA CTTCGCACTC GAGATGGCTC AGCTACATAA GATTAAGCTA
CACAAGACAG AACACGCTGA CCACACATAT AGTGAACTAT TTCTGCTTAT CTGTGCCCTA
TTGAGTCGAC AGCTTTCTCA GCAGCACACC TGCCTGCCGA TACATCAGAT TATGCTCGAT
AATCCGATGC AGGAGCCGAT ATCAAATTGT CAGATACTGT GCAGCCACAA TGAAATCATT
GAGATATTAG CGCAGTTCAA TGCAATTAGT TCACCGGGTT TGGAGCAAGC CAGCTCACCT
TCAACACCGA TAATTTTAGA CAATGGCGAT CTGTACCTGC AGCGCTATTA TCAGTTCGAG
ACTCAAGTCG CGAGTTACCT CACCCTGTTA GCCGATGTTG AAATAAATGA GCAGCCCACA
GAGATCAATC ATACCCGCAG CACATTAGAG ATGCTGTTCC CCCAAAGCGA TGAGATGGGT
GCCACCGACT TTGACTGGCA AAAAATAGCA ACGGCTACCG CCTTTACCAA ACGTTTAGCG
GTAATAACCG GTGGCCCGGG CACGGGTAAA ACCACCACGG TAACTAAATT GCTGTTTTTA
CTGACACAGC AAGCGGCCAT GACCATACGA TTAGTTGCGC CGACGGGTAA GGCTGCCGCG
CGATTGAGTG AGTCAATCAA AGCCTCGAAG GTGCGCCTGA AAATGGAACT GGCACCGTTT
GCCGACCAAA TTGATTTAAC CAGCTTGAGC CGGGTACCGG AGGAGGCCTC CACCCTGCAC
CGCTTGCTTG GCGTGATCCC GAACTCCCCC AAATTCAGGC ACCATAAAGA TAACCCCCTC
AGGCTGGATC TGCTCGTTGT AGATGAAGCC TCTATGGTCG ACCTGCCCAT GATGCACAAG
CTGCTCTCGG CGCTCCCCAC ACATGCCAGA CTCATTCTAC TGGGCGATCA AGATCAGTTA
GCCTCGGTGG AAGCCGGGGC CGTGTTAGCA GACATCTGTG CTGGATTAAA ACAGAAAAAT
ACCAGAACAA ATGCCAGTGA TGCCAAGTGG CAGATGCGAT ATTCGAGCGA CTATGCCGGG
TATCTTTCTA CATTATCAGG GTTTGACCTT AGCCCCTTTA TCAGCCAGTC ACCTAAGATT
GGCGATAGCC TGTGTATGCT GATGCACAGC CACAGATTTA AAGGAGATGC AGGCATAGGT
CAACTGGCAG GTGCGGTCAA TAACTCAGAC AAAGGCCGAA TTATGCAGGT ATGGCAAACC
GGATATGATG AGCTATTGTG GATTGAACAC CTGAAAACCA ATGCAGGCAA TTCGGGGCTA
GATGCACTAC TCACCCAAGC GGTGGAGCAT TATCGGCGAT ATCTCGAGAT GGCTAAAGAT
GACAACAAAG ATGCCAGTGA AATCATCGAT TGTTATAACG AGTTTCGAGT ATTATGTGCC
ATGCGGGCGG GCGAGTATGG TGTCGATGGC ATCAATCAGG GTGTGACCGC CGCACTGAAG
CAGGCCAAAC TTATCAGTGC CGACACCGAG TTTTATCCGG GCCGCCCGGT GATAATCCAA
AGCAACGATT ATAACCTGGG GCTATTTAAC GGCGATATTG GCCTTATCTT ACCGGATGAC
TTAAACACGG TATCAGATCA TTTAGCCCAA GATGGCGATA CGGCGAAACA CTCTGCCCGC
CTGATGGCAC ACTTTATTCA GGCCGATGGC AGTATCTTAA AGGTGCTACC CGCACGCCTT
CCAAGCCACG ATACCTGCTT TGCCATGACG GTACATAAGA GCCAGGGCAG CGAGTTTGCC
AATGTAGCGC TCGTGCTGCC CATCTGGCCC AGCCCGGCCC AAAAACAGTT GCTGACAAAG
GAACTGGTTT ATACGGCCAT CACCCGCGCC AAGCTGCATT TTACCTGCCT GGGCTCACAA
GCCGTTTTCG AGCATGCCAG CCTGCAGGCC ACTCAACGCT CGTCCGGGCT TGCGAGACGT
TTATGGGGAT AG
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| Protein sequence | MIQSTQPIKA LLKVWESERL ITPLDRHFAL EMAQLHKIKL HKTEHADHTY SELFLLICAL
LSRQLSQQHT CLPIHQIMLD NPMQEPISNC QILCSHNEII EILAQFNAIS SPGLEQASSP
STPIILDNGD LYLQRYYQFE TQVASYLTLL ADVEINEQPT EINHTRSTLE MLFPQSDEMG
ATDFDWQKIA TATAFTKRLA VITGGPGTGK TTTVTKLLFL LTQQAAMTIR LVAPTGKAAA
RLSESIKASK VRLKMELAPF ADQIDLTSLS RVPEEASTLH RLLGVIPNSP KFRHHKDNPL
RLDLLVVDEA SMVDLPMMHK LLSALPTHAR LILLGDQDQL ASVEAGAVLA DICAGLKQKN
TRTNASDAKW QMRYSSDYAG YLSTLSGFDL SPFISQSPKI GDSLCMLMHS HRFKGDAGIG
QLAGAVNNSD KGRIMQVWQT GYDELLWIEH LKTNAGNSGL DALLTQAVEH YRRYLEMAKD
DNKDASEIID CYNEFRVLCA MRAGEYGVDG INQGVTAALK QAKLISADTE FYPGRPVIIQ
SNDYNLGLFN GDIGLILPDD LNTVSDHLAQ DGDTAKHSAR LMAHFIQADG SILKVLPARL
PSHDTCFAMT VHKSQGSEFA NVALVLPIWP SPAQKQLLTK ELVYTAITRA KLHFTCLGSQ
AVFEHASLQA TQRSSGLARR LWG
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