| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1934 |
|---|
| Symbol | |
|---|
| ID | 5611321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2324596 |
|---|
| End bp | 2326500 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640932820 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473673 |
|---|
| Protein GI | 157375073 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCGA TTTCGGGCAG TTCAAATTTT TCCACCTCAA TAATACGAAG GCGGTATTAT
TGGATATTTA CGCTTTTTTT CCTGCTGTTT GGTAGCTTAG TTGCGGTGAT CACCTCCTTG
ATTAACTACA ACATTCAATA TACCAATATT GAAAGTGAGA TCCGTGAAAA GGTGGCCGCA
GAAAAGGCCA TTAAACATGA CTTGCTTTAT GAATTTATGC AGCATGCAGA AAATGTGGTT
GGTGCAATCG CGGCTAGCGA GTTAACAATC AAATATGTAA CGACAAACAG TCCCGATGCA
CATCGTAACC TCAATCACCT TCTGCTTGCC GCCACAATGT CTAATGATTC ATTTATGCAA
CTGCGTTTCA TCGAATCATC GGGAATGGAG GCGGCCAGGG TCGATCGAAT TAAAGGTGAA
GATACGCCAG TCATCATCCC TAAACCCTTG CTTCAGAATA AACAAGATAG GTACTACTTC
AGAGAGGCTG CACCCTTATC GGATGGGACA TATTGGCATT CACACTTTGA CCTGAATATG
GAGCACGGTC AGATTGAGAT ACCTATTCGT CCAACATTTC GTATTGCGAC CCCGGTATTT
TCACAAGATG TGTTTTCGGG TTTGATCATT GCGAACATCT CTCTCGATCC GCTCTTGTCC
ACACTCGGTG CATCATCCGA CTTCGATATC TATATCATAG ATAAGGAGGG GGAGTTTATT
CTTCATCCCT TACCTGAGCA GGGCTGGAGT CGATACCTTC CTAATCGTTC TAACGTGTTC
ACGCAATTTC CTGAGTTCGG AAATTCTGTT TTAGAGGTGA AAGATACCCA TAAGGGGGAT
CATTTCACCT TCCAGATAAG CGAGATCCTT AAGAACCATG ACGAAGCGTT TGTTATGGCC
GTCCCGCGCA AGAGTCTGCT TGCTAAATTC AAGAAAAATA ACATGTTAAC TGCGGGCCTT
ACCGCGCTTA CTGTGCTGCT GGTTTCATTA GTTCTGTCGG GCTTAGTAGC CATTATTCCT
GCTAGGTTAC AGAGAAAACT GACCGACGCG TATTTTAAAA TTAAAAATTA TGCCGAGATC
ATTAATAGAT ATGTCATCAC ATCATCGACA GACAGAGCGG GCCATATCTT GTCTACCAGC
GCCGCCTGCA GCGAGGTGTA TGGTTTCTCG GCCGAAGAGA TGAAGGGAAA GAGACACAAT
ATTGTAAAAC ACCCGGATAC TCCCGCCGAA ACCCATGAGG ATATATGGCG AACGATTCTG
CAGGGAAAAA CATGGCACGG GGAAATTAAA GATAAAGCTA AGAATGGCAA CAGCTTCTGG
CTTAACCATG TGATCACTCC TGATTTTGAC GATAACGGCA AGATTGTAGG TTTTACCTCG
GTAAGTCACG ATATTACGGA TAGAAAGGAG ATCGAGCGTT TGTCAGTTAC GGACACACTT
ACCGGACTCA ATAACCGTCG TCGACTCGAT GAGCTGTTTA TTAATGAATT TGATCGCTTC
AATCGATATG AGCGTCAATT TAGTATGATC TTGCTCGATG TCGATCACTT TAAACAGGTT
AACGATAAAT TTGGTCATAA GGTTGGTGAC AAAGTCCTGA TCGAGATGGG AGAGATCTTG
GCTTCGAGTG TCCGTAAAAA TGATCTGCTG GGCCGGTGGG GCGGCGAAGA ATTTCTGCTT
ATTTGTCCCG AAACCTCCAT CGATGGTGCG ATAGATCTGG CTGAAAAAAT ACGCAAAATC
ATCGAAGACA CTGATTTTCC GGAAATCGGC AGTGTGACCG CCAGTTTCGG AGTGACAGTT
TCGATAAAGG ATGACAGTGA CGAGGATATG TTTATTCGCG CAGATAATGC CTTGTATACG
GCTAAGCGAG ATGGTCGAAA CTGTGTCGTT CAATTAACCC GATGA
|
|---|
| Protein sequence | MKAISGSSNF STSIIRRRYY WIFTLFFLLF GSLVAVITSL INYNIQYTNI ESEIREKVAA
EKAIKHDLLY EFMQHAENVV GAIAASELTI KYVTTNSPDA HRNLNHLLLA ATMSNDSFMQ
LRFIESSGME AARVDRIKGE DTPVIIPKPL LQNKQDRYYF REAAPLSDGT YWHSHFDLNM
EHGQIEIPIR PTFRIATPVF SQDVFSGLII ANISLDPLLS TLGASSDFDI YIIDKEGEFI
LHPLPEQGWS RYLPNRSNVF TQFPEFGNSV LEVKDTHKGD HFTFQISEIL KNHDEAFVMA
VPRKSLLAKF KKNNMLTAGL TALTVLLVSL VLSGLVAIIP ARLQRKLTDA YFKIKNYAEI
INRYVITSST DRAGHILSTS AACSEVYGFS AEEMKGKRHN IVKHPDTPAE THEDIWRTIL
QGKTWHGEIK DKAKNGNSFW LNHVITPDFD DNGKIVGFTS VSHDITDRKE IERLSVTDTL
TGLNNRRRLD ELFINEFDRF NRYERQFSMI LLDVDHFKQV NDKFGHKVGD KVLIEMGEIL
ASSVRKNDLL GRWGGEEFLL ICPETSIDGA IDLAEKIRKI IEDTDFPEIG SVTASFGVTV
SIKDDSDEDM FIRADNALYT AKRDGRNCVV QLTR
|
|---|
| |