| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1932 |
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| Symbol | |
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| ID | 5611262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2320657 |
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| End bp | 2323344 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932818 |
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| Product | pyridine nucleotide-disulphide oxidoreductase |
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| Protein accession | YP_001473671 |
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| Protein GI | 157375071 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0418716 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAAAG AAAAAGTATT AGACCTCGCC AATAAGATCA GCCGAACCAA GCGAGGTTCA
AGGAATGAAA TTAAGCAAGG CGATCCCGAG TACCAAATCC TGGAGCCTAT CGTTACCGAG
CCCATGGCCG AAGTGGCACT TTGCTTAGCC TTGCGTAAGC CCCTTAGCGC ACAAGAGGTC
GCCCAGCAGT GCGGAAAATC GGAAGAGGAA ACCGCCAAGC TTCTTTGGCA GGTCGCCATG
GTCGGTGCCG CCTTTGTCAA CGAAATCGAT GGTGTCGATA AATACTGGAT AGATGTCTGG
GTTCCCGGTC ATATGGAGAT GATCGTCAAC AACAAGGAGT TGATCCAAAA GTTCCCCCAA
CTCGGCGCCG CCTTCGATGC TTTTGGCAAG AAAAAGGGCC CACTCGCCGC AGGAAATATC
CCCGTGGGCT CAGGGCCTAT GCGGGTGATC CCCATTCAAA CCGCCATCGA TGGCGAGACT
CGCAGCGCCT CCTATGAAGA GGTATCCAAA TACCTGAATG ACAACAGCCT CTTCTCGCTT
TCCGATTGCG CCTGCCGCAC ATCGAGAGAG GCCATGGGTG AAGGCTGTGG TCACCTCAAA
GAAGATATGT GCATCCAGAT GGGACACGCC GCCGAATACT ATATTCGTAC CGGCCGTGGC
CGAAAGATCA CCCGGGAAGA CGCGTTCGAG GTGATCAGAA AAGCCGAAGA AAATGGCTTG
ATGCATAGTA TGCCAAACTT CGATGGCTCC GGGGAGACCC ATGCCATCTG TAATTGCTGC
GGTTGTGGTT GTTTCGCGCT CCGTCTTGCT GGCATGTGGC AAAATCCGGA TATGGTCCGA
TCCAACTATG TGGTCAAAAT CGATGCCGAG CAGTGCGTAG CTTGCGGCGA GTGTGTCGAG
GTCTGTCCCA CCAATGCATT GAAGTTAGGT CAAAAGTTAT GCGAGATATC CCCCGCCAAA
ACGGCAAAGA GAGATTTGCC TCATGATACT CACTGGGGCC CGGATAAATG GAACCCCGAT
TACCGAACCA ACAAACAAGT CGTACTCGAT GGTGGCACCA GCCCTTGTAA GGCCGAATGC
CCTGCCCATA TCGGTATTCA GGGCTATATC AAATTGGCGG CTCAGGGAAA ATACCGTGAG
GCTCTCGAGC TGATTAAGCG AGAAAACCCC TTCCCCGCAG TATGTGGCCG GATCTGTCCG
AAAAAGTGCG AGTCCGACTG TACCCGTGGA GACATTGATC ATCCGGTTGC TATCGATGAG
ATAAAGAAGT TTATTGCCCA GCAAGATCTC GATGCTAAAA CCCGTTTTAT TCCCGAAATT
AAGCATAGCC ATGACAATAA AATTGCCATT ATTGGCAGTG GACCAGCGGG ACTCTCCTGC
GCATATTTTC TGGCGATTGA AGGATACCAG GTCACCGTAT TTGAAAAGCA AACTGCCCTA
GGCGGCATGT TAACCCTGGG GATCCCCTCC TATCGACTCG AGAAAGAGGT CATCAATGCC
GAAATAGAGG TATTAAGAGC CTTAGGTGTC ACCTTCAGAT GTGGCGTCGA AGTGGGCAAA
GATATCAGTC TGAGCGAGTT AAGAGGCCAG GAATACCAAG CATTCTATCT CGCAATCGGG
GCACAAGCTG GCAGACGCTT AGGTCTTATT GGTGAAGATG CCGTTGGCGT ATCGACCGGG
GTGGATTTTC TTCGCAAAGT AAATCTGGGC GAAACAGATA ATCTTGATGG TAAGGTCGTT
GTTATCGGCG GCGGCAATGT TGCCATCGAT GTCGCCAGAA CGGCGACGCG TGTAGGCGCC
AGCACCGTAG ATCTCTTTAC CCTCGAAAGC TTGGATCAGA TGCCTGCCCA TGTCGAAGAA
GTTGAAGAGG CGCTCAGTGA GGAAATTTCC ATCAACAACT CCTGGGGACC CAAACGTATC
ATCACCCATG ATGGAAAAGT GACTGGCGTC GCATTCGCCA AGTGTCTGTC CGTATTGGAT
GAAGAGGGCA AATTCGCTCC CCGCTTCGAT GAACAGACCA CCACACTGGT GGAGGCCGAT
CATGTGTTGA TCTCAGTCGG ACAGGCTATG GATTGGGGCA ACTTGCTTAC AGACAGTCGC
CTGGAGTTAA ATCCCAACCT AACTGTTCAG GCCGATCCAG ATACCTTCCA GACCCATGAA
GCGGACATTT TTGTCGGCGG AGATGTATTA ACCGGACCTC AGTTTGCTAT CGATGCTATC
GCTCATGGCA AAGAAGGCGC CATCTCCATC CATCGCTATG TTCAGCACGG TCAGAGTCTG
GTACTGGGGC GTATTAAGCG TGATTATCGT TCATTCGACA AAGATAAGCT GAATCTCGAT
GGCTTCGATA ACACGCCGAG ACAGGCACTC GATCATGTTG ACGGTAAGGA GTCTAAGCAA
ACCTTCAGAG ATCTGCGCGG CACCTTTACT CAGGAGCAGG TACAGCAGGA AACTGAGCGT
TGTTTGGGAT GTGGTGTTGC CGTTGCCGAT GAGTTTATGT GTATCGGCTG CGGTGCCTGC
ACGACGAAGT GCCAGTTCGA TGCTATCTCT CTGGTCAGGG CCTATGACGC CGATGGCGCC
GACCTTCGCA CGGTAAAAAA AGTCATCATA AAACACGCAC TGAAACGTAA AGTCAAAATT
GCGGTCAATG CGCCCATCAA GCGCATTAAA GCCCTGATGA CTGACTAG
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| Protein sequence | MVKEKVLDLA NKISRTKRGS RNEIKQGDPE YQILEPIVTE PMAEVALCLA LRKPLSAQEV
AQQCGKSEEE TAKLLWQVAM VGAAFVNEID GVDKYWIDVW VPGHMEMIVN NKELIQKFPQ
LGAAFDAFGK KKGPLAAGNI PVGSGPMRVI PIQTAIDGET RSASYEEVSK YLNDNSLFSL
SDCACRTSRE AMGEGCGHLK EDMCIQMGHA AEYYIRTGRG RKITREDAFE VIRKAEENGL
MHSMPNFDGS GETHAICNCC GCGCFALRLA GMWQNPDMVR SNYVVKIDAE QCVACGECVE
VCPTNALKLG QKLCEISPAK TAKRDLPHDT HWGPDKWNPD YRTNKQVVLD GGTSPCKAEC
PAHIGIQGYI KLAAQGKYRE ALELIKRENP FPAVCGRICP KKCESDCTRG DIDHPVAIDE
IKKFIAQQDL DAKTRFIPEI KHSHDNKIAI IGSGPAGLSC AYFLAIEGYQ VTVFEKQTAL
GGMLTLGIPS YRLEKEVINA EIEVLRALGV TFRCGVEVGK DISLSELRGQ EYQAFYLAIG
AQAGRRLGLI GEDAVGVSTG VDFLRKVNLG ETDNLDGKVV VIGGGNVAID VARTATRVGA
STVDLFTLES LDQMPAHVEE VEEALSEEIS INNSWGPKRI ITHDGKVTGV AFAKCLSVLD
EEGKFAPRFD EQTTTLVEAD HVLISVGQAM DWGNLLTDSR LELNPNLTVQ ADPDTFQTHE
ADIFVGGDVL TGPQFAIDAI AHGKEGAISI HRYVQHGQSL VLGRIKRDYR SFDKDKLNLD
GFDNTPRQAL DHVDGKESKQ TFRDLRGTFT QEQVQQETER CLGCGVAVAD EFMCIGCGAC
TTKCQFDAIS LVRAYDADGA DLRTVKKVII KHALKRKVKI AVNAPIKRIK ALMTD
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