| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1926 |
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| Symbol | ushA |
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| ID | 5611217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2315363 |
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| End bp | 2317069 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932812 |
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| Product | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor |
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| Protein accession | YP_001473665 |
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| Protein GI | 157375065 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACATA AAGTAGTAAA AAGTCTGATA TCGGCAGCCA TTCTTGCAGC ACTAGTCGGT
TGTAATGACA GTGGTAACAC CGACGTAGAA GAGGTCTGCG GTGAAGATAA CTGTATAAAG
TTTACCGTAC TCCACACTAA TGATAATCAC GGGCGATTTT GGGAAAACAA ACATGGCGAG
TATGGCATGG CCGCCCGTAA GACATTAGTC GAACAGATCC GCAACCAGGT CTCTTCAGAT
GGCGGTGAAA CCATCTTGCT CTCTGGGGGA GATATCAATA CAGGGGTTCC CGAGTCTGAT
CTACAAAACG CTGAGCCGGA TTTTCGAGGT ATGAATCTCA TCGGTTACGA TGCGATGGCT
GTAGGTAATC ATGAGTTTGA CAACTCGCTA TCAGTGGTGG AGCAGCAAAG GAGATGGTCT
GATTTTCCTT GGCTCGCCGC GAATATTTAT AAAAAAGAGG TCAATGAAGA GGGAGATGAA
TCTCTGGTTC GCTATTTCGA TGCATATAAA ATTTTCGACA TCAATGGGCT TAGAGTGGCT
GTTATTGGTC TTACAACGGA AGATACCGCC ACTATAGGTA ACCCGGAGAT AGTCGGCGAT
CTCACCTTTA CCGATCCTAA AGATGAGATC AAGAAAGTCA TCGCTGAGAT TGAGCAGGAC
AACGCTGCCG ACGTTATTTT TGCAACGACA CACATGGGAC ATTACGCCGA TGGACAAAGC
GGCAGCAATG CTCCCGGCGA TGTCGCGCTT GCCAGAGCAT TATCTGAGGG GCAACTGCAA
GCGGTCTTTG GCGGTCACTC ACAAAACCCT GTGTGCATGG AATCCGGCAC CAATGACTAT
GCCAACTTCC AACCCGGAGA TGAATGTATT CCCGATCAGC AAAATGGCAC GCATATAATG
CAAGCCTATG AGTGGGGGAA GTATGTAGGG CAGGCAGATT TCGAATTCTA TGGCGGTAAA
CTTCATCTGG CCAGTTACCA ATTAATTCCG GTAAATTTAA AAGTAAAAGA CGAAAACGGC
GATCGGATTT TGGTCGGCGA TAAGATTAAG CCCGATCTAT ATGTCAAAGC CTTCCTTAAG
CCTTTCAAAG AGAAGGGGGA GGAACAACTC GATGAAAAGA TTGCCTTCAC CCAGGATACC
TTGGCTCGTG GAAAAAGTGA CAGGCAGATA GAACTTGGTC ACCTTATCGC ACGCTCAAAT
AGTTCCTTAG TCAATGCCGA TTTTGCGGTT ATGAATTCAG GCGGTATTCG TGCCTCTATC
GAAGCGGGTG ACATTACCTA CCGGGACGTA TTAACCGTAC AACCCTTCGG CAATACCATC
ACCTTAAGCG AGTTCACGGG AGCGGAGGTG ACAGAGTATC TCAATGTTGT TGCCACTAAA
CAGGTCGGCT CCGGCGGGTA TGCCCAACTG TCAGGCATCA AGATGACTGT AGATTGTCAG
GAGCAGCAGG TCGATATCAG CGATATCAAC GGTAAGGGGT TTAGTAATGA TGCAAGCTAC
ACCTTCACTG TACCCAGCTA CAGCGCCTCT GGCGGCGACA GTTACCCTAA ACTCTCTACT
GTGGATCTGG GGATCACAGA TGAAAAAGCC CTGAAAGACT TCCTCGCCGA CAGGGGGACG
ATATCCAGTG GCGAGTTCGC CCCGGTGCCG GGGGATATCG TTTATCAAAA CTCCGAGAGT
GTCACAGGTT GTAAAATTTC ACAGTAA
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| Protein sequence | MKHKVVKSLI SAAILAALVG CNDSGNTDVE EVCGEDNCIK FTVLHTNDNH GRFWENKHGE
YGMAARKTLV EQIRNQVSSD GGETILLSGG DINTGVPESD LQNAEPDFRG MNLIGYDAMA
VGNHEFDNSL SVVEQQRRWS DFPWLAANIY KKEVNEEGDE SLVRYFDAYK IFDINGLRVA
VIGLTTEDTA TIGNPEIVGD LTFTDPKDEI KKVIAEIEQD NAADVIFATT HMGHYADGQS
GSNAPGDVAL ARALSEGQLQ AVFGGHSQNP VCMESGTNDY ANFQPGDECI PDQQNGTHIM
QAYEWGKYVG QADFEFYGGK LHLASYQLIP VNLKVKDENG DRILVGDKIK PDLYVKAFLK
PFKEKGEEQL DEKIAFTQDT LARGKSDRQI ELGHLIARSN SSLVNADFAV MNSGGIRASI
EAGDITYRDV LTVQPFGNTI TLSEFTGAEV TEYLNVVATK QVGSGGYAQL SGIKMTVDCQ
EQQVDISDIN GKGFSNDASY TFTVPSYSAS GGDSYPKLST VDLGITDEKA LKDFLADRGT
ISSGEFAPVP GDIVYQNSES VTGCKISQ
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