| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1917 |
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| Symbol | |
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| ID | 5610679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2305683 |
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| End bp | 2306615 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932803 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001473656 |
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| Protein GI | 157375056 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000018485 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAAATT TTGACTTTAA CCTGCTAAGC GTTCTTGAAG TTCTGCTGGA GGAGCAAAGC
GTCACCGCGG CGGCTGCCAG ACTTCATTTG AGTCAATCGG CGGTAAGTAA ACAGCTCGCC
AGATTGAGAC TCACCTTCGA CGACCCGCTC TTCGAAAGAA CGGCTTATGG TTTGAGACCC
ACCCCTAAGG CGATGCTACT GGCCCCGGAT CTGCGACAGG TACTCAACCA AGTCGCCCAA
TTAACACGAC CTGATGAGTT TGAGCCTGAG TTAAGCCAGA GAAAGTTCAG GCTCAATATT
GTTGAAACGG CTTACTCGTT AACCTATCCG CATTTTATGC CAGCGCTATT GCAACAAGCG
CCCGGTATTA AAATGGATAG TCAAACCTGG CACACCGAAA GTATGGATAA GCTACTTCGC
TGCGAAATAG ATCTGGGGAT CGCCTGCCGG GAGTGGGATA AACGCTCGCT ATTGCACATG
GATAATATTC CCGATGATCT TAACTATGTA GAGCTACTGC GTGATCATCC GGTATGCCTG
GTCAGTAGTA AGCATCCCCT ACTGAATGAG CCCTGGAATT TAGAGACCTT TCTCAAATAC
CGTCACCTTC AGGTTACTTT TGGTGGTTTT GAGCATTGGT TACTCGATGA TGTACTTAAT
CTGGAACATC AAAAGCGAGA TATTGCGGTA AATTTAACGG ATTTTCACAG TGCCATGCAC
CTATGTGAAA ATAGTGAGTT ACTGCTTTGT TGCCCGGCAA AATACGCCGC ACAGATGAGC
CATCAATTTT CGCTGACGAC CTTAGATATT CCCCTGAAAC TGGTACCCGG TGCTTATGTT
CTACTTTGGC ACAAACATTT TGATCTAGAT CCAAGCCATC GCTGGCTTAG AGAGATGATC
ATTGAATCGG TGCAGCAAGT CCATCCAGTC TAG
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| Protein sequence | MKNFDFNLLS VLEVLLEEQS VTAAAARLHL SQSAVSKQLA RLRLTFDDPL FERTAYGLRP
TPKAMLLAPD LRQVLNQVAQ LTRPDEFEPE LSQRKFRLNI VETAYSLTYP HFMPALLQQA
PGIKMDSQTW HTESMDKLLR CEIDLGIACR EWDKRSLLHM DNIPDDLNYV ELLRDHPVCL
VSSKHPLLNE PWNLETFLKY RHLQVTFGGF EHWLLDDVLN LEHQKRDIAV NLTDFHSAMH
LCENSELLLC CPAKYAAQMS HQFSLTTLDI PLKLVPGAYV LLWHKHFDLD PSHRWLREMI
IESVQQVHPV
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