| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1915 |
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| Symbol | |
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| ID | 5611070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2304822 |
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| End bp | 2305412 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932801 |
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| Product | periplasmic nitrate reductase, cytochrome c-type protein |
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| Protein accession | YP_001473654 |
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| Protein GI | 157375054 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
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| TIGRFAM ID | [TIGR02161] periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000371882 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.91066 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATGGA TTATTAACGC CTTAAAAGGC TTCTGGGGCA TATTGAGGCG GCCGAGTAAA
GCCGCCGTAG GTATCGTTCT ATTTATGGGC TTTGCAGGTG GACTCATATT CTGGGGTGCA
TTTAACACAG GTATGGAAGC GACAAACACT GAAGAGTTTT GTTCTGGATG TCATGCGCCA
ATTGTGGCAG AAATTCAAGA AACTATTCAC TACGCAAACC GCTCTGGTGT TCGTGCTATC
TGTTCAGATT GTCACGTACC TCATGCTTGG ACGGATAAAA TCGTGCGTAA GGTTCAGGCT
TCTAAAGAGC TGTTTGCCTA TTTTGTTACT CAAACCATTA ACACACCGGA GAAGTTCAAG
GAGCGACGCG CTCATTTAGC CGAAAGGGAG TGGGCAAGAA TGAAAAAGAA CGACTCTTTA
GAGTGTCGTA ACTGTCATAA CTTTGATTAT ATGGACTTCT CTGAGCAGAG CCCCCGTAGT
GTTAGGCAGC ACTCTACAGC GCTTGCCAGT GGTGAAAAGA CCTGTGTGGA TTGTCATAAA
GGTATCGCAC ATAAACTGCC AGATATGCAC AAAGTTGACG GTTGGCAATA A
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| Protein sequence | MKWIINALKG FWGILRRPSK AAVGIVLFMG FAGGLIFWGA FNTGMEATNT EEFCSGCHAP
IVAEIQETIH YANRSGVRAI CSDCHVPHAW TDKIVRKVQA SKELFAYFVT QTINTPEKFK
ERRAHLAERE WARMKKNDSL ECRNCHNFDY MDFSEQSPRS VRQHSTALAS GEKTCVDCHK
GIAHKLPDMH KVDGWQ
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