| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1913 |
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| Symbol | |
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| ID | 5611068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2301847 |
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| End bp | 2304336 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932799 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_001473652 |
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| Protein GI | 157375052 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000463649 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.796386 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATGT CTAGACGTGA GTTTATCAAA GCAAATGCAG CAGCTTCAGC TGCAGCGCTT
GCTGGTGTTA CTCTTCCTGC CACTGCAACG AACTTAATCG CATCAAGCCA AGAGTCAAAA
ATTCATTGGG ATAAAGCACC TTGCCGTTTC TGTGGTACAG GTTGCTCCGT ACTTGTTGGT
ACTCAGGAAG GTAAAGTTGT TGCCACCCAA GGTGACCCAG AAGCTCCTGT AAATAAAGGC
CTTAATTGTA TTAAAGGTTA CTTTCTTTCA AAAATCATGT ATGGCTCAGA CCGGCTAACT
CAGCCGCTGT TGCGTCAAAC TAATGGTAAA TTTGATAAGA ACGGTGATTT TGCTCCAGTA
AGCTGGGATC AAGCCTTTGA TATCATGGCT GACAAGTGGA AAGCCGCGTT AAAAGAGAAA
GGTCCGACTA GCGTGGGTAT GTTTGGCTCT GGTCAGTGGA CGGTAATGGA AGGCTATGCT
GCATCTAAGA TGATGAAAGC AGGTTTTCGC TCTAACAACA TCGACCCTAA CGCGCGTCAC
TGTATGGCCT CTGCTGTTGG CGGCTTTATG CGTAGCTTTG GTATTGATGA GCCTATGGGC
TGTTATGATG ACTTCGAAGA AGCCGATGCC TTCGTGTTAT GGGGCTCTAA TATGGCAGAG
ATGCACCCCA TTTTATGGAG TCGCATCACC GATCGTCGCT TAAGTCATCC CCATGTGAAA
GTGAACGTAT TATCAACCTA TTATCACCGT TCATTTGAAC TTGCTGATAA AGGTTACATC
TTTAAGCCAC AGTCTGACCT TGCAATAGCC AACTTTATTG CTAACTACAT CATTGAAAAC
GATGCGGTTA ATTGGGACTT TGTTAATAAG CACACTCATT TCAAACAAGC CACTACTGAT
ATCGGTTACG GTTTAAGAGA TGAACACCCT CTACAAAAGA AGGCTGCTAA CCCCAACGTT
GGTAAAGTTC AAGCTATCGA CTTTGAACAG TACAAAAAAT CAGTAGCGCC ATACACAGCC
GAAAAGACTG CCGAGATGAC GGGGCTTAGT GAAGATGAGC TAGTGACCTT AGCTAAGCAG
TTCGCCGATC CAAAGATTAA GGTGATGTCA CTTTGGACTA TGGGGATGAA CCAACATACC
CGTGGCGTAT GGATGAACTC GCTGGTTTAT AACATCCACT TGCTTGTTGG TAAGATATCA
GAGCCAGGAA ACGGTCCATT CTCACTCACA GGCCAGCCTT CTGCTTGTGG CACGGCACGT
GAAGTGGGTA CTTTCTCGCA TCGTTTACCT GCAGATATGG TCGTTGCCAA CCCTAAGCAT
CGAAAGCTTG CTGAGAAGCT ATGGAAGATC CCTGAAGGTA CGATTCCACC AAAGCCAGGA
TTCCATGCAG TTTTACAAGA TCGTAAGCTT AATGATGGTG CGCTTAATGC TTATTGGACC
ATGTGTAACA ACAATATGCA GGCAGGCCCA AATATCAACG AAGAGCGCTT ACCTGGTTAC
CGTAATCCAG AGAATTTTAT CGTCTGCTCT GATCCTTACC CCACAGCAAC TGCACAAGCC
GCTGACTTGA TTCTTCCTAC AGCAATGTGG GTAGAAAAAG AGGGTGCTTA TGGTAATGCT
GAACGCCGTA CACAGGTTTG GTACCAGCAG GTTAAAGCGC CAGGTGACGC TAAATCGGAT
CTGTGGCAGA TAATGGAATT TGCGAAGCGC TTCAAAATTG AAGAGGTGTG GAGTGAAGAG
CTAATTGCAA AGATGCCTGA AGTACGCGGT AAAAACATGT GCGAAGTGCT GTTTGAAAAC
GGCCAAGTGA ACAAGTTCCC ATTATCTGAA GCGCAAGAGC TCAATGATGA TGCAAAAGAT
CAAGGTTACT ATGTACAAAA AGGTATGTTC GAAGAGTATG CAAGCTTTGG CCGAGACCAT
GGACATGATT TAGCCCCATA CGACCGCTAC CATCAAGAGC GTGGTTTACG TTGGCCAGTG
GTCAACGGTA AAGAGACCAA GTGGCGCTTT AAAGAGGGGT CAGATCCTTA TGTAGGTAAA
GGTAAAGGGT TTGAGTTCTA TGGTAAGCCA GATGGTAGAG CATGGATTAT CTCGGCACCT
TACGAGGCGC CACCAGAGTC ACCAGATGAT GAGTTTAACC TGTGGTTATG TACTGGCCGT
GTATTAGAGC ATTGGCATAC AGGTACCATG ACACGCCGTG TACCTGAGCT GTACAAGGCC
GTTCCAGATG CTGTTTGTTT CATGCATCCA GATGATGCTA AGTCACATGG TGTTCGCCGT
GGCGATGAAG TGTTAATGAG CAACAAACGT GGTGAGGTCC GTGTGCGTGT TGAGACAAGA
GGTCGTAACC GTCCACCAAA AGGCTTAGTG TTTGTTCCAT TTTTCGATGC TCGTATTCTA
GTCAACAAGC TGATTTTAGA TGCAACTGAC CCTCTGTCAA AACAGACAGA TTTTAAAAAG
TGTCCAATAA AAATTACTAA AGTGGGATAA
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| Protein sequence | MKMSRREFIK ANAAASAAAL AGVTLPATAT NLIASSQESK IHWDKAPCRF CGTGCSVLVG
TQEGKVVATQ GDPEAPVNKG LNCIKGYFLS KIMYGSDRLT QPLLRQTNGK FDKNGDFAPV
SWDQAFDIMA DKWKAALKEK GPTSVGMFGS GQWTVMEGYA ASKMMKAGFR SNNIDPNARH
CMASAVGGFM RSFGIDEPMG CYDDFEEADA FVLWGSNMAE MHPILWSRIT DRRLSHPHVK
VNVLSTYYHR SFELADKGYI FKPQSDLAIA NFIANYIIEN DAVNWDFVNK HTHFKQATTD
IGYGLRDEHP LQKKAANPNV GKVQAIDFEQ YKKSVAPYTA EKTAEMTGLS EDELVTLAKQ
FADPKIKVMS LWTMGMNQHT RGVWMNSLVY NIHLLVGKIS EPGNGPFSLT GQPSACGTAR
EVGTFSHRLP ADMVVANPKH RKLAEKLWKI PEGTIPPKPG FHAVLQDRKL NDGALNAYWT
MCNNNMQAGP NINEERLPGY RNPENFIVCS DPYPTATAQA ADLILPTAMW VEKEGAYGNA
ERRTQVWYQQ VKAPGDAKSD LWQIMEFAKR FKIEEVWSEE LIAKMPEVRG KNMCEVLFEN
GQVNKFPLSE AQELNDDAKD QGYYVQKGMF EEYASFGRDH GHDLAPYDRY HQERGLRWPV
VNGKETKWRF KEGSDPYVGK GKGFEFYGKP DGRAWIISAP YEAPPESPDD EFNLWLCTGR
VLEHWHTGTM TRRVPELYKA VPDAVCFMHP DDAKSHGVRR GDEVLMSNKR GEVRVRVETR
GRNRPPKGLV FVPFFDARIL VNKLILDATD PLSKQTDFKK CPIKITKVG
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