| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1911 |
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| Symbol | |
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| ID | 5611159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2297022 |
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| End bp | 2300897 |
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| Gene Length | 3876 bp |
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| Protein Length | 1291 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932797 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001473650 |
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| Protein GI | 157375050 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0589397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0863094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTTCGC AACAACACCC TCTATCGAAT GCTTATCTAA AACAGTGTTA TCAATCCGAT
GCTTCTCGTA TAAGACGGCG CCTTTACAGG CTCAATAAAG AGGCCGATTC AGATAAGAAA
CGTCTCACAC TCGAGAAGCT TGAAGCGCAA GCGGTTGAAG CTTTTGAGAA GGTAGAGCGG
AGGCGTCAAG GGCGTCCGGA CATAAGCTAT CCGGAAAGCC TGCCCATCTC ACAAAAACGT
GAAGAGATTG CCAGGGCGAT TGCGGGTCAC CAGGTGGTTA TTATTGCCGG TGAAACGGGA
TCGGGCAAAA CGACTCAATT ACCAAAAATT TGTCTCGAGT TGGGTCTAGG TTGCCGTGGC
TTGATTGGTC ATACTCAACC AAGACGATTG GCAGCCAGAA GTGTCGCCAG TCGCGTAGCC
GATGAGCTAA AGAGCCCGCT GGGCGAGGCC GTTGGTTTTA AAGTCCGATT TGCCGATGCT
ATCAATAGCG ACTCCTATAT CAAGTTGATG ACCGACGGTA TCTTGCTGGC CGAACTCACC
AACGATAAGT TCTTAGACCA GTACGACACC ATCATCATAG ATGAAGCCCA TGAGCGTAGC
CTCAATATCG ACTTCATCTT AGGCTACCTG AAAGAGGTCC TGAAGAAGCG TCCGGACCTT
AAGGTTATCA TCACCTCGGC AACCATCGAT CTCGATAAGT TTTCAAAGCA CTTCGGCGAT
GCCCCTATCA TCGAGGTATC GGGGCGCACC TATCCGGTTG AGACCCGGTT CAGGCCGCTG
GTGCGTGATA GTGATGAAGA TCTGGACCTT ACCGAAGGGA TATTCGAAGC GGTCGACGAA
CTGACAGCGG AAGGGCCGGG TGACATTCTC ATCTTTATGA ACGGCGAGCG TGAAATTCGC
GATGTGGCCG ATCAGTTAAA CCGACGTCAA TATCGCGATA CCGAGATATT ACCTCTCTAT
GCGCGCCTCT CTTACGGCGA GCAATCGAAA GTGTTTAAGA GCCATGTGGG TCGCCGTATC
GTATTGGCCA CCAACGTGGC GGAAACCTCC TTGACGGTCC CCGGCATTCG ATACGTTATC
GATCCCGGTA CGGCGCGCAT CAGCCGTTAC AGTTATCGCA CTAAGGTTCA GCGTCTGCCG
ATTGAGCCCA TCTCACAAGC CAGTGCCAAC CAGAGGCAGG GGCGTTGTGG CCGTGTGGCA
CCGGGGATCT GTATTCGGCT TTACGCCGAG GACGATTTTA CCGGTCGTCC GGAATTTACC
GATCCTGAGA TCCTGCGTAC TAATCTCGCA TCCGTTATCC TTAAAATGCT TTCGATTGGT
CTTGGTGACA TCGAAGCATT TCCATTTATT CAGCCACCGG ATCAGCGTTA CATTCGGGAT
GGTTTTCTGC TGCTCGAAGA GTTGGAAGCC GTTCAGAAAG CCAAAGGTCG TTTAGGATTA
ACACCACTGG GTAAGCAGTT GGCTCATATC CCTGTGGATC CACGTCTGGC GCGGATGGTG
ATCCAGGCTA ATCAAAATGG CTGTCTGCAT GAGGCGCTCG TCATCACCTC GGCGTTGTCG
ATACAAGATC CACGCGAACG TCCGATGGAT AAGAAGCAGG CGGCGGATGA AGTCCACAAG
AAGCACAGTG ACAAAAACTC TGACTTCGTC TCTTTCGTTA ACCTGTGGGA CCACCTTAAA
GTTCAGCAGA AGCAATATTC CTCCAGCCAA TTCAGGAAGC AGTGTAAGAA GGAGTTTCTT
GCCTACCTGC GGGTACGTGA GTGGCAAGAT CTCTACGTTC AGCTGAAACA GGCGGTACAT
GACCTTAAAT GGCGTCTCAA TACCGAGCCT GCCGATTATG AACTACTGCA TAAATCCTTG
CTGACAGGCT TGCTCAGCCA TGTGGGCTTT AAAGATAAAG ACAACGAATA CTTAGGTGCA
CGTAATCGTA AATTCTTTGT GTTTCCCGGC TCGCCACTGG CGAAGAAGGG ACCAAAATGG
ATCATGGCTG CAGAACTCAC CGAAACCTCG CGTCTGTTTG CCCGCTGTTG TGCCAAAATC
CAACCTGAAT GGATCGAGCC GTTAGCCGGA CATCTGGTTA AGAAAAATTA CCTTGAGCCT
CATTTTGAAG CTAAGCAGGG CAGTGTTGTC GCCCTTGAAA ATCAAGTTTT GTATGGCCTT
ACTATTGTTA ATCGCCGTAA GACCCAATAT GGGCCGGTTA ACGCTATTGA GGCTCGTGAG
ATCTTTATTC GTAGCGCCTT AGCCGATGGC GAGCTCAGAA CCAACGAATC TTTCTTCATC
AAGAATCAAA ACTTACTCAA AGAAGTTGAA ACCTTAGAGC ATAAGTCACG TCGCCGAGAC
ATCCTGGTTG ATGAGCAGGT TTTGGTGGAC TTCTATGAGC CCCGTATCCC CGCCGGGATA
TACAATGCGC CAAAATTTTT CAGCTGGTGG AAACTCGAAC GTAAGAAGAA TCCGGATCTA
TTAGATTTCG AACGTGAGCA GTTGATGCAG CGCGGTGATA GTCATGTCTC AGCATTAGAT
TTCCCGGACT TTTGGCATCA GGGGAACCTT AAGTTATCTG TGAGCTACCA TTTCGAACCC
TCGGCTGAAG ATGATGGGGT CGCGATTCAT GTGCCGGTGG CCCTGCTTAA CCAGATCCAA
GATGTAGATT TTGATTGGCA GGTTCCGGGA CTAAGAGAAG AGAAGTGCGT CGCACTGATT
AGATCTCTGC CTAAAGCGAT TCGTCGTAAC TTCGTTCCAG CCCCTGACTA TGCCAAAGCC
TGCATGCAGG CTATGAAGCC CTTCGAGATG AGCCTAATTG ATGCCATGTG CAAGCAGTTG
CTTCGCATGA CTGGTGTGCG TGTCAGTGCA GAAGACTTCG ATGTTACTCA GTTGAGTAAA
CATCTGCTGT TTAATTTCAA AGTAGAAGAT GATAAAGGGA AGTTGGTTGC TCAGTCTCGT
GACATTGAGC AGCTTAAAGC CAGTTTACAG GGCGAAGTCT CTCATGCTAT TCGCCAGGTT
GCGGATTCGG GGATCGAAAA ATCTGATCTC ACTGAGTGGT CTTTTGGCGA GCTGCCGAGT
CAATTTCAGC AGAAGAAGGG GAACTTTGAG GTCAAAGCAT TCCCTGCTCT GGTCGATGAC
AGAGAGAGTG TATCAATCAA GTTATTTGAT GATGAGAATG AAGCGATTCG GGCACACCGC
TCGGGTCTGC AACGCCTCTT GTTGATCAAC ATTCCTTCAC CGGTGAAACA TCTGCAAAAA
ACCTTGCCCA ATAAGGCGAA GTTGGCGATG TACTTCAATC CATTTGGTCA GGTACAGATT
TTAATCGACG ATATTTTAGC GGCCGCAGTA CAACAGTTGC TTGATGAGAA AGGCGTCGAT
GTTCGTTCAC AAGCCAGTTT CGAACAGGCG AAAGACTGGG TAAGGCAGGA GCTTAATCCA
ACAGCTGCCA AACTTGCGTT AAAAGTCGAA GAGATACTGA CACTTTATCA AAAGATTAAG
AAGCGTTTGA AGGGCAAGAT CAGTCTGGAT ATCGCCTTTG CGATGAGTGA CATTCAAACG
CAACTGGATC AGTTGGTATT TAAGGGGTTC GTTGAGCGAT GTGGCTGGCA GCGTCTACCG
GATATGGTGC GCTACCTGAA GGCCATCGAT AACCGATTAG ACAAGCTTCC GGTTGACCCG
AATCGAGACC GACTCCATAT GCAAAGTATA AATAATGTTC AAAAGGAGCT TGAGGCACAA
CTGGCTAAGA TCCCCAGATC GGTGGCGACG CCCGAGGCGC TGCTCGACGC GCGTTGGATG
ATTGAGGAAT ACCGGGTTTC CTGTTTTGCT CAGGTGTTAG GCACGGCTTA TCCTATCTCT
GAAAAGCGAA TTCTGAACCG AATTAAAGAG GCATAA
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| Protein sequence | MSSQQHPLSN AYLKQCYQSD ASRIRRRLYR LNKEADSDKK RLTLEKLEAQ AVEAFEKVER
RRQGRPDISY PESLPISQKR EEIARAIAGH QVVIIAGETG SGKTTQLPKI CLELGLGCRG
LIGHTQPRRL AARSVASRVA DELKSPLGEA VGFKVRFADA INSDSYIKLM TDGILLAELT
NDKFLDQYDT IIIDEAHERS LNIDFILGYL KEVLKKRPDL KVIITSATID LDKFSKHFGD
APIIEVSGRT YPVETRFRPL VRDSDEDLDL TEGIFEAVDE LTAEGPGDIL IFMNGEREIR
DVADQLNRRQ YRDTEILPLY ARLSYGEQSK VFKSHVGRRI VLATNVAETS LTVPGIRYVI
DPGTARISRY SYRTKVQRLP IEPISQASAN QRQGRCGRVA PGICIRLYAE DDFTGRPEFT
DPEILRTNLA SVILKMLSIG LGDIEAFPFI QPPDQRYIRD GFLLLEELEA VQKAKGRLGL
TPLGKQLAHI PVDPRLARMV IQANQNGCLH EALVITSALS IQDPRERPMD KKQAADEVHK
KHSDKNSDFV SFVNLWDHLK VQQKQYSSSQ FRKQCKKEFL AYLRVREWQD LYVQLKQAVH
DLKWRLNTEP ADYELLHKSL LTGLLSHVGF KDKDNEYLGA RNRKFFVFPG SPLAKKGPKW
IMAAELTETS RLFARCCAKI QPEWIEPLAG HLVKKNYLEP HFEAKQGSVV ALENQVLYGL
TIVNRRKTQY GPVNAIEARE IFIRSALADG ELRTNESFFI KNQNLLKEVE TLEHKSRRRD
ILVDEQVLVD FYEPRIPAGI YNAPKFFSWW KLERKKNPDL LDFEREQLMQ RGDSHVSALD
FPDFWHQGNL KLSVSYHFEP SAEDDGVAIH VPVALLNQIQ DVDFDWQVPG LREEKCVALI
RSLPKAIRRN FVPAPDYAKA CMQAMKPFEM SLIDAMCKQL LRMTGVRVSA EDFDVTQLSK
HLLFNFKVED DKGKLVAQSR DIEQLKASLQ GEVSHAIRQV ADSGIEKSDL TEWSFGELPS
QFQQKKGNFE VKAFPALVDD RESVSIKLFD DENEAIRAHR SGLQRLLLIN IPSPVKHLQK
TLPNKAKLAM YFNPFGQVQI LIDDILAAAV QQLLDEKGVD VRSQASFEQA KDWVRQELNP
TAAKLALKVE EILTLYQKIK KRLKGKISLD IAFAMSDIQT QLDQLVFKGF VERCGWQRLP
DMVRYLKAID NRLDKLPVDP NRDRLHMQSI NNVQKELEAQ LAKIPRSVAT PEALLDARWM
IEEYRVSCFA QVLGTAYPIS EKRILNRIKE A
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