| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1908 |
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| Symbol | |
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| ID | 5611156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2293450 |
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| End bp | 2294586 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932794 |
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| Product | hydrogen:quinone oxidoreductase |
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| Protein accession | YP_001473647 |
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| Protein GI | 157375047 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
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| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.935417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0653543 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACACAC ATGCAGCCCT ATATCGACAG GGACAGGCGC GTTTGGATAT GCTGCGCCAG
CTCAAATCCC GAGACGGACA GTCATTAACT AGCAAAATGA AAGAACATGG CATCACACGC
CGTGACTTTA TGAAGTGGAG CGCATCTGTA ACAGCGATGC TTGCACTTCC CCTTCCATTC
AGTACGCTTG TCGCGGAAGC CGCGGAACTT GCCGATAGAG TACCGTTAAT CTGGTTACAC
ATGGCCGAGT GCACAGGTTG TTCTGAGTCT TTAATAAGAA CCGATACGCC TAATCTGGAT
TCTCTTATCT TCGATCATGT TTCATTGGAA TACCATGAAA CCTTGATGGC CGCCGCAGGC
TGGCAAGCTG AAGAGAACCT GGAACATGCA ATGGAGGCCT ACAAAGGCCA ATATCTTCTT
GCAGTAGAAG GCGCAGTTCC TACAGCAAAC AACGGTGCTT ACCTAACCGT AGGTTGTAAA
GGTCACACTG GCCTTGAAAT CGTCAAGCAT GCTGCCGAAG GCGCTGCAGC GATTATTTCT
GTCGGTACCT GTGCAGCTTT CGGTGGTATT CAAGCAGCCT CGCCTAACCC AACGGGTGCA
AAAGGCATAC ATGAAGTAGT CGACAAGACA GTGATTAACT TGGGTGGTTG TCCTCCAAGT
GAGAAGAACA TTGTCGGAAC ACTGATGTAT TTCATCATGT TTGGCAAACT TCCTGCTCTC
GATATGTTCA ATCGTCCTAA ATGGGCTTAC GGTGCACGTG TACACGATAA CTGTGAACGT
CGTGGCCGTT TCGATGCAGG TGAGTTCGTC GAAGAGTTTG GTGACCAAGG TGCTAAAGAG
GGCTACTGCC TCTATAAGGT AGGTTGTAAG GGTCCTTATA CCTATAACAA CTGCCCTACC
GAAAGATTTA ACCATCATAC CAGTTGGCCA GTGCTTGCAG GACATGGTTG TATGGGCTGC
TCAGAGCCAA ATTTCTGGGA TGATATGGCT GACTTTGAGA AGCCACTTGG CAGACAACTC
CTCCATGGAA TTGATGCAAC TGCGGACACC GTAGGTGCCG TTATTCTTGG AGCAACTGCA
GTGGGTATTG GCGCCCATGC CGTTACCAGC ATTTTCGCCA AGCCACTGGA GGAGTAA
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| Protein sequence | MDTHAALYRQ GQARLDMLRQ LKSRDGQSLT SKMKEHGITR RDFMKWSASV TAMLALPLPF
STLVAEAAEL ADRVPLIWLH MAECTGCSES LIRTDTPNLD SLIFDHVSLE YHETLMAAAG
WQAEENLEHA MEAYKGQYLL AVEGAVPTAN NGAYLTVGCK GHTGLEIVKH AAEGAAAIIS
VGTCAAFGGI QAASPNPTGA KGIHEVVDKT VINLGGCPPS EKNIVGTLMY FIMFGKLPAL
DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDQGAKE GYCLYKVGCK GPYTYNNCPT
ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGIDATADT VGAVILGATA
VGIGAHAVTS IFAKPLEE
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