Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1903 |
Symbol | |
ID | 5610826 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2286248 |
End bp | 2288599 |
Gene Length | 2352 bp |
Protein Length | 783 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640932789 |
Product | (NiFe) hydrogenase maturation protein HypF |
Protein accession | YP_001473642 |
Protein GI | 157375042 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0068] Hydrogenase maturation factor |
TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000745392 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTGAAA CAAGAGAAAA TAACACTCTC TCTTCCTTAC AGCCGAACTC GGCTGTAAGG GTTGAAATCA TTGTCACAGG TATCGTTCAA GGGGTCGGCT TCCGCCCCTT CGTCTATCGC TATGCTAAGG ATGAAGAACT CTGTGGTTTC GTGCTCAACA ATGGCCAGGG AGTCACCATT GAAGTTCAGG GGAAATGGCG CAATATTGAA AGTTTTATCG CGCGTTTTGA TACCTCTCCT CCCCCGCTCG CTCGTATCGA TACGCTCAGC TCAAAGCCGA TTGCCATTGT CGATGATTGC CAGGATTTCA TCATAGTGGC CAGTGATGGT AACACGAGTG CTGTTGTGGC AGTCTCGCCC GATAAGAGTT GCTGCAGCGC CTGTCTGGAG GAGATCAATG CCCCGGATAA CCGCCATTAC CGTTATCCGT TTACTAACTG CACCAACTGC GGCCCAAGAT ATACTCTGAT TAAGGCCTTG CCCTACGACA GAAAACACAC CTCAATGGCA AGCTTTGCCA TGTGTTCACG TTGTGAAGCT TCCTATCTCG ATCCAATGGA CAGGCGTTAC CATGCTCAGC CCGTCAGCTG CCCGCAGTGC GGGCCACAAC TGTCTCTGCT CTCGAGCGAT GGAGATATCG TCTCGCATGC AGATATGGCA CTGACCGAAA CGGTTCAACG GCTATTACAA GGCGAAATAG TTGCAATTAA AGGGCTTGGT GGATTCCATT TAGTCTGTGA CGCGACCAAT CATGATGCGG TTCAGCGGTT GAGAGAGCGA AAGAGACGAC CGGGTAAACC ATTAGCAGTC ATGGTGAGTA GTCTTGAGAT GGCAAAATCC ATCGTGACAG GTTCACAATT TGAGTGGGAT CAGCTCACCT CGATTGAAAG ACCTATCACC ATCATGACCA AAAACCGCTC AAACACGGTC AATTTAAGCC CGGCAATCGC GCCAGGAATC GATAAGTTAG GGGTGTTTTT ACCCTACACG CCTCTGCATT CCCTGCTTCT CAAAGAGTTA GATATTCCTA TCGTAGCCAC CAGTGCTAAT CGCAGCGGTG AACCGATAAT TTGTGATGGG AAAGAGATCA TCGCTCAGCT TTCTGAGGTG GTAGATTCAA TTCTGGATCA TAACCGTCCC ATCATCAACG CCTGTGATGA CAGTGTCATT CAATGTATCG GCGATGAGGT TCAGGTGTTG CGTCTGGCCC GTGGCTTCGC GCCATTGAGC ATACGCAATC CCACAGGCAG TGCGTCGCAT CAGCTCGCTG TAGGTGCACA GCAAAAGAAT TCTATCGCCT TTGGATTCGC CGACAAAATG GTATTAAGTC CCCATATCGG CGATCTGTTT AGCTTAGAAG CCGAAAGCTA TTTTGAACAT ACATTGGCCA CCTTTAAACG CCTGTATCAA TTTAGCCCTA AAACCGTTAT CCGGGATAAA CATCCTGACT ACGCCCCCTC TAAATGGGCG CAGCGCTTTA TCGAACTGAA CGAGGGAGTT AAACAGTTAG AAATACAGCA TCATCATGCC CATATACTCA GTGTCATGGC CGTCAATCAG GTTAAGGATA AGGTACTCGG TTTTAGCTTC GATGGAACCG GTCTTGGTGA CGACCAGTCC TTATGGGGTG GCGAGGCGCT TATCGCCGAT GTGAATGGCT TCGAACGAGT CTGCCACATT AAACCTTTTA TGCTAATAGG TGGAGAACAG GCAATTAAGG ATCCGAAACG TTTGCTGCTG GCAATCCTGT TTCAGCAGTA CTCCTTAGAG GAACTTGGTG CTCTTTCACT GCCCATTTTG ACTAAAACCG ACCCAAGACT CATAGAGAAT CTGCATAAAA TTTGGCAGAG CAAGAGTCGC TGCATCGAAA CCTCTTCTAT CGGTCGTATT TTCGATGCGG TCGCCGTACT ACTGGGCTTG ATAGAGAAAA ACCAATTTGA GGGCCAGGCC GGTATGTTAC TCGAAGCGGC GGCCAATCGA TTCGACGATC ACATAGCAAC CGAGGAGTTT TGTTACTCAC TACCTGTTAT CGATGGCATG TGGCACCTCG ATACCCTGTT TAAGCAGTTA GTCTCCAGCG TAACCCAAGA GACATTAACT GAACAGAGAG TCTGTGCTAT TGCACGTGGA TTTATGAATA GCCTGGGCGA TGCCGTCGCC AAACTTGCAA AACAACACTC ACCCCTGCCG GTGGTGTTAT CTGGCGGTGT CTTTCAAAAC CGGTATCTCT CTGAGCTATG TATCACAAAG CTAAACGAGC AAGGTAGTAA GCGTTTAATG CCCCATCATG TTCCGATTAA CGATGGTGGT ATTGCACTAG GCCAGCTCTG GTATGGCTTG CATCACAAAT AA
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Protein sequence | MIETRENNTL SSLQPNSAVR VEIIVTGIVQ GVGFRPFVYR YAKDEELCGF VLNNGQGVTI EVQGKWRNIE SFIARFDTSP PPLARIDTLS SKPIAIVDDC QDFIIVASDG NTSAVVAVSP DKSCCSACLE EINAPDNRHY RYPFTNCTNC GPRYTLIKAL PYDRKHTSMA SFAMCSRCEA SYLDPMDRRY HAQPVSCPQC GPQLSLLSSD GDIVSHADMA LTETVQRLLQ GEIVAIKGLG GFHLVCDATN HDAVQRLRER KRRPGKPLAV MVSSLEMAKS IVTGSQFEWD QLTSIERPIT IMTKNRSNTV NLSPAIAPGI DKLGVFLPYT PLHSLLLKEL DIPIVATSAN RSGEPIICDG KEIIAQLSEV VDSILDHNRP IINACDDSVI QCIGDEVQVL RLARGFAPLS IRNPTGSASH QLAVGAQQKN SIAFGFADKM VLSPHIGDLF SLEAESYFEH TLATFKRLYQ FSPKTVIRDK HPDYAPSKWA QRFIELNEGV KQLEIQHHHA HILSVMAVNQ VKDKVLGFSF DGTGLGDDQS LWGGEALIAD VNGFERVCHI KPFMLIGGEQ AIKDPKRLLL AILFQQYSLE ELGALSLPIL TKTDPRLIEN LHKIWQSKSR CIETSSIGRI FDAVAVLLGL IEKNQFEGQA GMLLEAAANR FDDHIATEEF CYSLPVIDGM WHLDTLFKQL VSSVTQETLT EQRVCAIARG FMNSLGDAVA KLAKQHSPLP VVLSGGVFQN RYLSELCITK LNEQGSKRLM PHHVPINDGG IALGQLWYGL HHK
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