| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1900 |
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| Symbol | |
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| ID | 5611131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2284025 |
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| End bp | 2285140 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932786 |
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| Product | hydrogenase expression/formation protein HypD |
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| Protein accession | YP_001473639 |
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| Protein GI | 157375039 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00044285 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTAGCAC TGAAATCACT TTACCAAGGG TTCAGAGACC CTAAAACCAT TGCTAAACTG
GCGGAGATGA TCGCCATAGA AGCGGCAAAA TGTTCAGAAC CCATTAACAT CATGGAAGTG
TGCGGTGGAC ATACTCACAC CATCATGAAA TATGGTTTGA ATCAGCTCTT GCCTGAGAAC
ATTAAGTTCA TCCATGGGCC CGGATGCCCG GTTTGTATCA TGCCTAAAGA GCGTATCGAC
CATGCCGCGA CACTTGCCAG TCTACCTAAT GTCATTCTCG TCACATTAGG CGACATGATC
AGGGTGCCGG GTTCGAAAGG CAGCCTCGCC GAGTTCAGGT CGAAAGGGTG CGACATTCGT
CCGATCTACG ATCCACTCGA TACTCTGGCT ATCGCCATCG ATAACCCGGA TAAAACCGTT
ATCTTCTTTG CTATCGGCTT TGAAACATCT ACCCCTATGA CAGCGGTTCT TCTCGAGCAG
GCAGAAAAGA GAAATATCGA TAACCTGCTG TTTCATATCA ACCATGTGTT AGTGCCACCG
GCAATGGATG CGGTCATGGC GGATCCCAAG GCGACGGTTA ACGCCTTTAT CGGTCCGGCT
CACGTCAGCG TGATAAGTGG CGCTAAGGTC TATCGTCCTG CCGTTGATAA TTACCATATG
CCTGTTGTGG TATCGGGTTT TGAACCTGTC GACGTTATGG AGTCCATCTT AAGAATTACC
AAGCAGAAGG CGCAAGGTGT GGCCGAGCTC GATGTGCAAT ATAGCCGAGC CGTGACCGAA
GAGGGAAACC TTGCCGCACA GGAGAAGAAC GAGCACTTCT TCGAAATAAG AGAAGATTTC
CGCTGGCGTG GACTCGGCCC GATCCCAAAT TCCGCCCTGA AACTCAGCTC ACAATATGCC
CACCGGGATG CTGAACTCAT CTACGCCGAC AGGTTGCCGG TAAAAGAGAT CGACGACCAT
AAAGCCTGTC AGTGCGGTGA TATCCTGCGC GGACTCGCTA ACCCGAAAGA TTGTAAAGTC
TTCGGGCGAG GTTGCAGTCC TGAATCACCA CTGGGCAGTT GTATGGTCAG CTCTGAAGGT
GCCTGTAACG CTTACTACCG CTACAACGGA GTTTAA
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| Protein sequence | MLALKSLYQG FRDPKTIAKL AEMIAIEAAK CSEPINIMEV CGGHTHTIMK YGLNQLLPEN
IKFIHGPGCP VCIMPKERID HAATLASLPN VILVTLGDMI RVPGSKGSLA EFRSKGCDIR
PIYDPLDTLA IAIDNPDKTV IFFAIGFETS TPMTAVLLEQ AEKRNIDNLL FHINHVLVPP
AMDAVMADPK ATVNAFIGPA HVSVISGAKV YRPAVDNYHM PVVVSGFEPV DVMESILRIT
KQKAQGVAEL DVQYSRAVTE EGNLAAQEKN EHFFEIREDF RWRGLGPIPN SALKLSSQYA
HRDAELIYAD RLPVKEIDDH KACQCGDILR GLANPKDCKV FGRGCSPESP LGSCMVSSEG
ACNAYYRYNG V
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