| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1899 |
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| Symbol | |
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| ID | 5611130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2283006 |
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| End bp | 2284022 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932785 |
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| Product | hydrogenase expression/formation protein HypE |
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| Protein accession | YP_001473638 |
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| Protein GI | 157375038 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0309] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR02124] hydrogenase expression/formation protein HypE |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000371927 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGAATA AAATGAAGAG CAAAACCGTT CAGCTTAGCC ATGGTGGCGG TGGTAAAGAG
ATGAACGCAC TGATCCAGGA TATTTTCTTC AGTGAGTTTC ATAATCCGAT CCTGAACAGC
GAAGAGGATG CGGCACTACT GAACCTGTCC GGTGAGACGG CATTTACCAC AGACTCGTTT
ACCGTCGCCC CTATTTTCTT CGCCGGCGGC GATATCGGCA AACTGGCTAT CGCCGGCACG
GTTAACGATC TGGCGATGAT GGGTGCAGAG CCTCAATACC TGAGCTGTAG TTTCATCATC
GAAGAGGGTT TCGAGGTTTC TAAGCTCAAA ACTATCGCTG CGAGTATGAG TCAGGAGTTA
GCCAAGAGTG GCACACGCAT CGTCTGTGGC GATACCAAGG TGGTGCCGAA AGGTTGCGCC
GATGGTCTGT TTATCAATAC TTCCGGCGTG GGACGAGTGT TGCACAAGGG GATCTCGGTC
AAGAACATTC AGCAAGGTGA TGCCATCTTA GTCTCACGAG ACATAGGACG TCATGGCGCC
GCAATCTTGA TGGCCAGAGA GGCACTTTCT CTCGAGTCGG AGCTTACCAG TGATTGTGCC
AATTTATGGC CGGTTATCGA GCAGCTCATC GCCGCAAATA TTGACATTCA TGCCATGCGT
GATGCAACGC GAGGCGGATT AGCCGCAGTT CTCAATGAGT GGGCAGTGGC CTCGAATGTC
GGTATTAAGG TTGAAGAGTC AGCCATCCCT ATCTGTGATG AAGTGAAAGG TTTGTGCGAA
CTCTATGGTT TTGAGGCACA TGATTTAGCC AACGAAGGTA CGTTTATCAT CGCACTCCCT
CAGGAGATCG CGGCAGGGGC GTTAGAGATA ATGCAACGCT ACGGTCACTG CGAGAATGCC
GCCATCATAG GCACGGTGAC CGATGAGCAC CTTGGCAAAG TCGTTATCAA AACGCCATGG
GGAAGTAATC GCTACCTGGA TCTCCCTCAC GGTGAGTTGC TACCGAGGAT CTGCTAA
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| Protein sequence | MSNKMKSKTV QLSHGGGGKE MNALIQDIFF SEFHNPILNS EEDAALLNLS GETAFTTDSF
TVAPIFFAGG DIGKLAIAGT VNDLAMMGAE PQYLSCSFII EEGFEVSKLK TIAASMSQEL
AKSGTRIVCG DTKVVPKGCA DGLFINTSGV GRVLHKGISV KNIQQGDAIL VSRDIGRHGA
AILMAREALS LESELTSDCA NLWPVIEQLI AANIDIHAMR DATRGGLAAV LNEWAVASNV
GIKVEESAIP ICDEVKGLCE LYGFEAHDLA NEGTFIIALP QEIAAGALEI MQRYGHCENA
AIIGTVTDEH LGKVVIKTPW GSNRYLDLPH GELLPRIC
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