| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1886 |
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| Symbol | |
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| ID | 5610986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2272153 |
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| End bp | 2274411 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932772 |
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| Product | ATP-dependent Clp protease, ATP-binding subunit ClpA |
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| Protein accession | YP_001473625 |
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| Protein GI | 157375025 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00020211 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000193236 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTAAATA AAGATCTTGA AGTCACCTTG AATCTGGCGT TTCAGCAGGC CAGAGATGCC
CGTCATGAGT ATATGACGGT TGAACACTTA CTCTTAGCAT TGATTGATAA CCCTGCAGCA
CAGGAAGCTT TGGTGGCTTG CGGGGCAAAT CTTGATAAGT TAAGAGAAGA TGTGTCAGGT
TTTATTCAAC AAACGACGCC TATTATCGCC GATCCCGAAG ACGATAGAGA GACTCAGCCT
ACACTAGGTT TTCAGCGAGT ACTGCAAAGG GCCGTTTTTC ACGTTCAATC ATCTGGTCGC
AATGAGGTTA CCGGTGCCAA TGTTCTCGTT GCCATCTTCA GTGAGCAGGA ATCTCAAGCT
GTCTACCTCC TGCGTAATGG CGAAGTGACC CGTCTCGATG TGGTCAATTT TATCTCTCAT
GGTGTCTCTA AAAATGAGAT AGATAGCGGT TTGCATCAGG AGCAGATCGA AGATCAAACA
GAGACAGAGG AAGAGAAGAG CAAATTGTCT CAGTTTGCCG ACAATCTCAA CGAACGTGCG
CTTAAAGGAA GTATCGATCC CTTAATCGGT CGAAGTGAAG AGATAGAGCG CTCCATTCAA
ATTCTCTGTC GCAGAAGAAA GAATAATCCC CTGTTAGTGG GGGAAGCGGG GGTGGGCAAG
ACCGCCATTG CTGAGGGGTT GGCGTACCGA ATTGTAAAAG AGGAAGTCCC TGAAATCATG
AGCAGGGCAA CCGTCTACTC ATTAGACTTA GGTGCCCTGT TAGCCGGGAC TAAATATCGC
GGTGATTTTG AAAAACGGTT TAAGAGTCTG CTTAAAGAAC TCGAACAGGA TGAGCATGCG
ATTTTGTTTA TCGATGAAAT TCATACCATC ATAGGTGCCG GTGCGGCGTC GGGTGGAGTG
ATGGATGCAT CTAATCTGCT AAAACCTTTG TTGTCCGGCG GCAAGCTGAG ATGCATGGGG
TCGACCACTT ATCAGGAATA CCAGAGTATT TTTGAGAAGG ATAGGGCATT AGCCAGACGT
TTCCAGAAGG TGGATATTAA TGAACCTTCA GTGGCTGAAA CCACCAAGAT CCTTCAGGGG
CTCAAATCTA AGTATGAAGA GCATCATGGG GTCAGATATA CGATGGCCGC ATTAAGCGTT
GCGGCAAAGC TGTCCGATAA ACATATTAAC GACCGTCATC TCCCGGATAA AGCAATCGAT
GTTATCGATG AAGCGGGCGC TCGAATGGCG ATGCAACCCG CGAGTCGTCG TAAGAAAACG
ATTGGGCAGG GAGAGATTGA ATCTATCATT GCCAAGATGG CGCGTATTCC TGAGAAGTCT
GTATCGGCAA CTGACAAAGA TCTTCTGCGT AATCTTGACC GTAACCTTAA GATGGTGGTT
TTTGGTCAGG ATAATGCGAT TGAGAGCCTC AGTTCAGCGA TTCGCTTGTC CAGAAGTGGT
TTAGGCGGAG AGCAGAAGCC TGTGGGCAGC TTTTTGTTTG CCGGACCAAC GGGGGTGGGG
AAAACCGAGG TGACGAGCCA ATTGGCTAAA TGTCTTGGTC TTAACTTAGT GCGATTCGAT
ATGTCTGAGT ATATGGAAAG TCATACGGTC TCACGTCTTA TCGGTGCGCC TCCGGGGTAT
GTTGGTTACG ATCAAGGTGG GCTGTTAACC GACGCTGTGA TTAAAACGCC TCACTGTGTG
GTATTGCTCG ATGAGATCGA AAAGGCGCAC CCTGATGTCT ATAACTTGCT GTTGCAGGTG
ATGGATCACG GTACCTTAAC GGACAACAAT GGTCGTAAGG CCGATTTCAG GCATGTGACG
CTGGTGATGA CGACCAATGC GGGTGTTCAG GAGACGGTGA GAAAGTCGAT AGGCTTTAAG
CAACAAGATC ACAGTCTGGA TGCACTGTCT GAGATCAATA AAGTCTTTTC ACCGGAATTC
AGAAACCGCT TGGACGAGAT CATCTGGTTC AACCACCTCG ATATGATGGT GATTGCTAAG
GTTGTAGATA AGTTCCTCGT CGAACTTCAA GCTCAACTCG ATGATAAAGG CGTGACTTTA
GATGTCACCG ATGAAGCCAG AACCTTACTT GCAGAGAAAG GTTATGACAA GTCGATGGGA
GCAAGGCCTA TGGCAAGAGT CGTTACCGAA TTGATTAAGC GGCCGTTAGC CGATGAGATC
CTGTTCGGCG ACCTTGAGAA GGGTGGTGTT GCCCATGTCG ATATCAATAA AGATGAAATC
GTTATCTCTA TCAAGAGTCC AGAGAAAGTG AACGGCTGA
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| Protein sequence | MLNKDLEVTL NLAFQQARDA RHEYMTVEHL LLALIDNPAA QEALVACGAN LDKLREDVSG
FIQQTTPIIA DPEDDRETQP TLGFQRVLQR AVFHVQSSGR NEVTGANVLV AIFSEQESQA
VYLLRNGEVT RLDVVNFISH GVSKNEIDSG LHQEQIEDQT ETEEEKSKLS QFADNLNERA
LKGSIDPLIG RSEEIERSIQ ILCRRRKNNP LLVGEAGVGK TAIAEGLAYR IVKEEVPEIM
SRATVYSLDL GALLAGTKYR GDFEKRFKSL LKELEQDEHA ILFIDEIHTI IGAGAASGGV
MDASNLLKPL LSGGKLRCMG STTYQEYQSI FEKDRALARR FQKVDINEPS VAETTKILQG
LKSKYEEHHG VRYTMAALSV AAKLSDKHIN DRHLPDKAID VIDEAGARMA MQPASRRKKT
IGQGEIESII AKMARIPEKS VSATDKDLLR NLDRNLKMVV FGQDNAIESL SSAIRLSRSG
LGGEQKPVGS FLFAGPTGVG KTEVTSQLAK CLGLNLVRFD MSEYMESHTV SRLIGAPPGY
VGYDQGGLLT DAVIKTPHCV VLLDEIEKAH PDVYNLLLQV MDHGTLTDNN GRKADFRHVT
LVMTTNAGVQ ETVRKSIGFK QQDHSLDALS EINKVFSPEF RNRLDEIIWF NHLDMMVIAK
VVDKFLVELQ AQLDDKGVTL DVTDEARTLL AEKGYDKSMG ARPMARVVTE LIKRPLADEI
LFGDLEKGGV AHVDINKDEI VISIKSPEKV NG
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