| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1885 |
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| Symbol | clpS |
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| ID | 5613403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2271808 |
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| End bp | 2272116 |
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| Gene Length | 309 bp |
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| Protein Length | 102 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640932771 |
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| Product | ATP-dependent Clp protease adaptor protein ClpS |
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| Protein accession | YP_001473624 |
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| Protein GI | 157375024 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2127] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.130702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000637216 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGGTAAAG CAGTAAATAT CGAACATGTA GAAGAGCGTG TTGAATCGGA ATTAATGCCA
CCACCGATGT ATAAGGTGAT ATTAAACAAT GATGACTACA CTCCGATGGA TTTTGTGATT
GAGGTTTTAC AACTCTTTTT CAAAAAGAAT GAACAGGATG CCACGGACAT CATGTTGGCT
ATTCATAATC AGGGGAAAGG GATCTGTGGA GTATTTCCCT TTGGTATTGC AGAAACTAAG
GTTGCTCAGG TAAATCAGTT TGCAAGACAA AACCAACATC CGTTACTGTG TTCTTTAGAG
AAAGCCTGA
|
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| Protein sequence | MGKAVNIEHV EERVESELMP PPMYKVILNN DDYTPMDFVI EVLQLFFKKN EQDATDIMLA
IHNQGKGICG VFPFGIAETK VAQVNQFARQ NQHPLLCSLE KA
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