| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1884 |
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| Symbol | |
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| ID | 5613402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2271354 |
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| End bp | 2271560 |
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| Gene Length | 207 bp |
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| Protein Length | 68 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932770 |
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| Product | cold-shock DNA-binding domain-containing protein |
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| Protein accession | YP_001473623 |
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| Protein GI | 157375023 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.104557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000642748 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAAACG GAACTGTTAA ATGGTTCAAC AACGCCAAAG GATTCGGGTT TATTTGCCCT
GAAGCTGGTG GTGAAGACGT TTTTGCACAC TATTCTACCA TCGAAATGGA AGGCTATCGA
ACTCTAAAAG CAGGCCAACC AGTCCAATTC GAAGTGGAAG CGGGTCCAAA AGGTATGCAC
GCGTCAGCAA TTTCGCCAAC AAATTAG
|
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| Protein sequence | MANGTVKWFN NAKGFGFICP EAGGEDVFAH YSTIEMEGYR TLKAGQPVQF EVEAGPKGMH
ASAISPTN
|
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