| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1883 |
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| Symbol | |
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| ID | 5613401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2269013 |
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| End bp | 2271238 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932769 |
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| Product | isocitrate dehydrogenase (NADP(+)) |
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| Protein accession | YP_001473622 |
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| Protein GI | 157375022 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
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| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.615158 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000395954 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCGACA AATCATCAAC GATTATCTAT ACTGAAACAG ACGAGGCGCC AGCCTTAGCC
ACTCTGTCTT TATTACCTAT TATCAAGACG TTTACTCAAG CCGCTGGTGT GAATGTTGAA
ACTCGTGATA TCTCTCTATC GGGTCGGATT ATTGCTAATT TCCCTAACAA GCTTACAGAT
GCACAAAAAA TTTCAGATGC CTTGGGTGAA TTAGGTGAGT TAGTGGGTAA GCCTGATGCG
AATATTATCA AGCTACCTAA CATCAGTGCA TCAATTCCTC AGCTTAAAGC CTGTATTTTA
GAGTTACAGA ATAAGGGCTA CGATATTCCG TCATATCCTG ATGAGCCTGC AAATGCAGCC
GAAAAAGCGA TTCAGGCACG CTATGACAAA ATTAAAGGCA GCGCGGTTAA TCCGGTTCTT
CGTGAAGGAA ACTCAGATCG TCGCGCTCCG GGTTCAGTAA AGAAGTATGC ACAAAAGAAC
CCTCACTCGA TGGGGGCCTG GAGTCGTGAT TCAAAATCTC ATGTTGCGCA TATGAGTGAA
GGCGATTTTT ATGGTAGTGA GAAATCATTA ACGCTTGATA AAGAGAGTAA TGTGCATATC
GTACTGGCCA AGAAAGATGG CGGTGAGATG GTATTAAGAG AGTCACTCTC TTTGAAGGTC
GGTGAAGTCA TCGATGCTTC TGTCATGAGT AAAAAATCAC TGGTTGAGTT CTTCGAGCGT
GAAACTCAAG ACGCGAAGGC ACAAGGAGTT CTACTCTCTC TGCACTTGAA AGCGACCATG
ATGAAAGTCT CTGACCCCAT TCTTTTTGGC CATGCCGTTA AGGTGTACTA CAAAGAGTTA
TTCGCTAAGC ACTCAGAACT GTTTGAGCAA CTGGGCGTGG ATGTAAACAA TGGTCTTGGT
GATGTCTACG CGAAGATAGC CACGCTTCCA GAGGCTCAAA AAGCTGAAGT TGAAGCCGAT
ATAGCAGCTA TCTATCAGAC TCGTCCTGAG CTTGCTATGG TCGATTCAGA CAAAGGGATC
ACTAACCTCC ATGTGCCTAG TGATGTGATC ATCGATGCTT CTATGCCTGC AGCCATTCGT
ACATCGGGAA TGATGTGGGG TGTAGATGGT CAGCCTAAAG ATACTAAGGC GATGATCCCG
GATCGTTGTT ACGCCGGTGT GTATCAAGAG ACCATTCAAT TTTGTAAAGA AAATGGTGCG
TTTAACCCTT CTACCATGGG GAGCGTGCCA AATGTGGGCT TGATGGCACA AAAGGCTGAA
GAGTATGGTA GCCATGATAA AACGTTTGAG ATTCAGGCTG CGGGTACGGT TCGAGTCATA
GATAACCATG GTGACGTACT ATTGTCACAT GACGTTGAAG CTGGTGATAT CTGGAGAATG
TGTCAGGTTA AAGACGCGCC AATTCGTGAT TGGGTGAAAC TGGCCGTTAA ACGCGCACGT
CTTTCATCGA CTCCTGCCGT GTTCTGGTTA GATGAAAGCC GTGCTCATGA TGCTCAAATC
ATTAAGAAAG TGAATCAGTA TCTGCCTGAA CATGACACTG ACGGGTTAGC GATCCACATC
ATGTCACCGG TTGAAGCGAC TCGGTTTACG CTACAACGAA CTAAAGATGG GTTAAATACC
ATCTCTGTGA CCGGTAACGT ACTGCGTGAT TACCTGACCG ATCTATTCCC AATTCTCGAG
CTTGGAACGA GTGCAAAAAT GCTCTCAATA GTCCCTTTGA TGAATGGCGG TGGATTATTC
GAAACCGGTG CTGGCGGAAG TGCGCCTAAG CATGTTCAGC AAGTCGAAAA GGAAGGTCAC
CTGCGTTGGG ATTCTCTGGG TGAGTTTTTG GCGCTGGCGG CATCGCTGGA GCATCTGAGC
CAGACGACCG ATAATGCTAA GGCACAAGTA TTGGCCGATA CATTAGATAG CGCGATTGGC
CGATTCCTGG ACCAGAATAA GTCACCATTG CGCCGTGTCG GTCAGCTCGA TAACCGAGGT
AGTCATTTCT ATCTGGCAAT GTATTGGGCT CAGGCAGTTG CAGAGCAGAG TCAGGATACA
GAATTGAAAG CACAGTTTAC CGGGCTGGCT GAATCACTGG CGAACAGTGA AACTACAATA
GTCGATGAAC TCAATAACGC TCAGGGTAAT GCTGTCGACC TGGGTGGTTA TTATCGTCTC
GATGTAGATA AAGCCGCCGC AGAGATGCGT CCGAGTGCAA CATTAAATGC ATTGTTTACG
GTTTAG
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| Protein sequence | MTDKSSTIIY TETDEAPALA TLSLLPIIKT FTQAAGVNVE TRDISLSGRI IANFPNKLTD
AQKISDALGE LGELVGKPDA NIIKLPNISA SIPQLKACIL ELQNKGYDIP SYPDEPANAA
EKAIQARYDK IKGSAVNPVL REGNSDRRAP GSVKKYAQKN PHSMGAWSRD SKSHVAHMSE
GDFYGSEKSL TLDKESNVHI VLAKKDGGEM VLRESLSLKV GEVIDASVMS KKSLVEFFER
ETQDAKAQGV LLSLHLKATM MKVSDPILFG HAVKVYYKEL FAKHSELFEQ LGVDVNNGLG
DVYAKIATLP EAQKAEVEAD IAAIYQTRPE LAMVDSDKGI TNLHVPSDVI IDASMPAAIR
TSGMMWGVDG QPKDTKAMIP DRCYAGVYQE TIQFCKENGA FNPSTMGSVP NVGLMAQKAE
EYGSHDKTFE IQAAGTVRVI DNHGDVLLSH DVEAGDIWRM CQVKDAPIRD WVKLAVKRAR
LSSTPAVFWL DESRAHDAQI IKKVNQYLPE HDTDGLAIHI MSPVEATRFT LQRTKDGLNT
ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLMNGGGLF ETGAGGSAPK HVQQVEKEGH
LRWDSLGEFL ALAASLEHLS QTTDNAKAQV LADTLDSAIG RFLDQNKSPL RRVGQLDNRG
SHFYLAMYWA QAVAEQSQDT ELKAQFTGLA ESLANSETTI VDELNNAQGN AVDLGGYYRL
DVDKAAAEMR PSATLNALFT V
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