| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1879 |
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| Symbol | |
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| ID | 5610777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2264540 |
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| End bp | 2265907 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932765 |
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| Product | adenylosuccinate lyase |
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| Protein accession | YP_001473618 |
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| Protein GI | 157375018 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0015] Adenylosuccinate lyase |
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| TIGRFAM ID | [TIGR00928] adenylosuccinate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000162136 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACTTT CCGCACTAAC TGCTATCTCT CCCGTAGACG GTCGTTATGG TAGTAAAACC
GCCTCATTAA GAGGGATTTT CAGCGAGTAC GGCCTGACCA AATACCGTGT TCAAGTCGAA
ATTAACTGGC TAAAGCTGCT TTCCAGCTGT CCTGAAATTG AAGAAGTTCC CCCCTTTAGC
GAGACAGCGC TTGCCCTTCT CGATCAAATT AAAGATAACT TCAGTGAAGA AGATGCGCTG
CGCATTAAAA AGATTGAAGC GACAACCAAC CACGATGTAA AAGCGGTTGA ATACTTCATC
AAAGAGCAAA TCGCAGACAA TGCAGAACTT GTTGCAATCG ATGAGTTTGT GCACTTTGCC
TGTACATCAG AAGATATCAA TAACCTGTCT CATGGCCTGA TGCTCAGCGA AGCACGTGAG
CAGGTATTAG CCCCTTACTG TCAGCAAGTC ATCGATGCGA TCAAAGCCTT GGCTAAAGAG
CACCGTTCAG TACCTTTAAT GTCACGAACT CATGGTCAAC CGGCCTCTCC TTCTACCTTA
GGTAAAGAGA TGGCTAACGT TGTCATTCGT CTTGAGCGTC AATTAAAGCA GATCAATTCA
GTTGAGATCA TGGGTAAGAT AAATGGTGCA GTAGGTAACT ACAATGCTCA CCTGTCAGCC
TACCCTGAAG TTGATTGGCA TACGCTTTCA CAGCGTTTTG TTACCAGCCT GGGACTTAAC
TGGAACCCTT ACACCACACA GATCGAGCCA CACGATTATA TAGCCGAACT CTTCGATGCT
GTTGCGCGTT TCAATACTGT TCTTATCGAT TTTGACCGTG ATATCTGGGG CTATATCGCT
CTGGGTCACT TCAAGCAAAG AACCATTGCC GGCGAGATTG GTTCTTCAAC CATGCCACAT
AAAGTTAACC CTATCGATTT TGAAAACTCG GAAGGTAACT TAGGTATTGC TAACGCACTA
ATGCAGCATC TGGCATCTAA GCTTCCGGTC TCTCGCTGGC AGCGTGATCT AACCGATTCA
ACCGTTCTTC GCAACTTAGG TGTTGGTATG GCTCATGCGT TAATCGCCTA TCAAGCAACG
CTCAAAGGGA TCAGTAAGCT TCAAGTCAAT GAAGAGCAAC TGCGTGCTGA GCTGGATAAA
AACTGGGAAG TATTGGCAGA GCCTGTACAA ACCGTCATGC GTCGCTACGG TATCGAGAAA
CCCTATGAGA AGCTCAAAGA GCTGACTCGT GGTAAGCGTA TCGATGGCGA ACAACTCGCC
CTCTTTATCG ATGGTCTTGA GTTACCACAA GATGTCAAAA TCGAACTTAA GAAGATGACA
CCTGCTAACT ATATCGGTCG TGCGGAAGCC TTCGTAGACG AGCTATAG
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| Protein sequence | MELSALTAIS PVDGRYGSKT ASLRGIFSEY GLTKYRVQVE INWLKLLSSC PEIEEVPPFS
ETALALLDQI KDNFSEEDAL RIKKIEATTN HDVKAVEYFI KEQIADNAEL VAIDEFVHFA
CTSEDINNLS HGLMLSEARE QVLAPYCQQV IDAIKALAKE HRSVPLMSRT HGQPASPSTL
GKEMANVVIR LERQLKQINS VEIMGKINGA VGNYNAHLSA YPEVDWHTLS QRFVTSLGLN
WNPYTTQIEP HDYIAELFDA VARFNTVLID FDRDIWGYIA LGHFKQRTIA GEIGSSTMPH
KVNPIDFENS EGNLGIANAL MQHLASKLPV SRWQRDLTDS TVLRNLGVGM AHALIAYQAT
LKGISKLQVN EEQLRAELDK NWEVLAEPVQ TVMRRYGIEK PYEKLKELTR GKRIDGEQLA
LFIDGLELPQ DVKIELKKMT PANYIGRAEA FVDEL
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