Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1871 |
Symbol | |
ID | 5609725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2254314 |
End bp | 2256686 |
Gene Length | 2373 bp |
Protein Length | 790 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932757 |
Product | phosphoenolpyruvate synthase |
Protein accession | YP_001473610 |
Protein GI | 157375010 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
TIGRFAM ID | [TIGR01418] phosphoenolpyruvate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000196099 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000414181 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCAGCAAT ATGTACTCTG GTATCAAGAA TTAGGCATGG GTGACGTCAA CAAGGTAGGC GGTAAGAATG CTTCTCTTGG TGAGATGATT AGTAACTTAG CTAATGCAGG TGTTCAAGTG CCTGGCGGTT TTGCCACCAC CTCGTACGCG TTCAATGAGT TTCTTGAACA AAGCGGACTT AACCAGAAGA TATACGACAT TCTAGATACT CTAGATGTAG ATGACGTGAA CGCACTCGCT ACAGCCGGTG CACAGATCAG ACAATGGGTG ATTGACACCC CGTTCCACCC CGAATTTGAG CAAGTTGTTC GTGACTCTTA CGATACACTT TCCTCTCAAA CCAAAGAAGC TTCTTTTGCT GTTCGCTCGT CGGCAACGGC TGAAGATATG CCTGATGCGT CTTTCGCGGG TCAGCAAGAA ACATTCCTGA ACGTTAAAGG TTATGATTCT GTACTGGTCG CGATAAAGCA TGTTTTTGCT TCTTTGTTTA ACGATCGCGC TATCTCTTAC CGTGTTCACC AGGGTTACGA CCATAAGGGC GTCGCACTGT CTGCTGGCGT TCAGCGTATG GTTCGCTCTG ACACGGCAGC ATCTGGTGTT ATGTTCACCA TGGACACCGA ATCTGGGAAC AATGATGTGG TATTTATTAC CTCTTCATTC GGTCTTGGTG AGATGGTGGT ACAAGGTGCG GTTAACCCGG ATGAGTTTTA TGTTCATAAA CCAAGTTTAA CAGCGGGCCA TAAAGCGGTT GTACGTCGCA ATATTGGCAG CAAGTTAATT CAGATGGTTT ATTCGGACGA TCTCGACCAC GGTAAACAAG TTAAAATTGA AGATGTTGCA GCCGATAAGC GCCGCGAATT TTCAGTGAAC GATGAAGAAG TCATGGAGCT TGCTAAGCAA GCCATAATCA TCGAGCAGCA CTACGGTCGT CCAATGGACA TCGAATGGGC AAAAGATGGT AATGATGGCA AGCTTTATAT TGTTCAAGCA CGCCCTGAGA CCGTTCGTTC TCGTGAAGAT GTGCAACTGA TTGAACGCTA CCATCTTAAG ACTAAGGGTG ACGTTCTATG TGAAGGCCGT GCTATTGGCC ATAAGATCGG CAGTGGTGTG GCTAAAGTCT TGTCATCAAT TGCTGACATG GATCAAATTA AAGAAGGTGA CGTGCTCGTT ACCGATATGA CTGACCCTGA TTGGGAGCCA ATCATGAAGC GCGCAAGCGC TATCGTCACT AACCGTGGTG GCCGTACTTG TCACGCTGCA ATTATTGCAC GTGAACTAGG GGTTCCTGCT GTTGTTGGTT GTGGTGACGT CACTGAACGC ATTAAGAATG GTCAGGAAGT GACAGTTTCT TGTGCCGAAG GCGACACTGG CTTTATCTTC GATGGTATTC AAGATTTTGA TGTTGTACGT TCTCGTGTAG ATTCTATGCC TGAGCTGCCA ATGAAGATCA TGATGAATGT CGGTAACCCA GATAGAGCAT TTGATTTTGC CCGCCTTCCT AATGAAGGTG TTGGTCTTGC TCGCCTTGAG TTCATCATCA ACCGCATGAT TGGTATTCAC CCTAAGGCCT TGCTTGAGTT TAACCAGCAA GATGCAGCCC TTCAGGAAGA GATCCACGAG ATGATTGCAG GTTATGAATC ACCTGTTGAA TTCTATGTTG CACGCCTTGT TGAAGGTATG GCGACCATCG CATCTGCTTT CCATCCAAAG AAAGTGATTA TTCGTATGTC TGACTTTAAG TCTAACGAAT ACGCTAACTT GGTCGGTGGT GACAGATACG AGCCAGAGGA AGAGAACCCT ATGTTGGGCT TCCGTGGCGC GAGTCGTTAC ATCTCAGAAT CTTTCCGTGA CTGTTTTGCG CTTGAATGTG AAGCGGTTAA ACGTGTTCGT AATGAGATGG GCTTAACGAA TGTTGAGATC ATGATCCCAT TCGTACGTAC GGTTGATGAA GCGAAGCAGG TTATCGAACT GCTTAAAGAG GAAGGTCTAG AGCGTGGTAA AGATGGTCTT CGCGTCATCA TGATGTGTGA ACTGCCTTCA AATGCACTGC TTGCCGATCA GTTCCTTGAG CACTTCGATG GTTTCTCTAT CGGGTCTAAC GATTTGACTC AGCTAACACT CGGCTTAGAT CGTGACTCTG GCATCATCAG TCATCTATTC GATGAGCGTA ATGATTCGGT TAAAGCGTTA ATGGCAATGG CCATTAAAGC AGCCAAGGCT AAAGGTGCCT ATGTTGGCAT TTGCGGTCAG GGACCTTCTG ATCATGCTGA TTTCGCAGCC TGGTTGGTTG ACCAAGGCAT TGATACGGTA TCGCTAAACC CAGATACAGT TATCGATACT TGGTTGTACC TAGGCAAAGA ACACGCGCAA TAA
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Protein sequence | MQQYVLWYQE LGMGDVNKVG GKNASLGEMI SNLANAGVQV PGGFATTSYA FNEFLEQSGL NQKIYDILDT LDVDDVNALA TAGAQIRQWV IDTPFHPEFE QVVRDSYDTL SSQTKEASFA VRSSATAEDM PDASFAGQQE TFLNVKGYDS VLVAIKHVFA SLFNDRAISY RVHQGYDHKG VALSAGVQRM VRSDTAASGV MFTMDTESGN NDVVFITSSF GLGEMVVQGA VNPDEFYVHK PSLTAGHKAV VRRNIGSKLI QMVYSDDLDH GKQVKIEDVA ADKRREFSVN DEEVMELAKQ AIIIEQHYGR PMDIEWAKDG NDGKLYIVQA RPETVRSRED VQLIERYHLK TKGDVLCEGR AIGHKIGSGV AKVLSSIADM DQIKEGDVLV TDMTDPDWEP IMKRASAIVT NRGGRTCHAA IIARELGVPA VVGCGDVTER IKNGQEVTVS CAEGDTGFIF DGIQDFDVVR SRVDSMPELP MKIMMNVGNP DRAFDFARLP NEGVGLARLE FIINRMIGIH PKALLEFNQQ DAALQEEIHE MIAGYESPVE FYVARLVEGM ATIASAFHPK KVIIRMSDFK SNEYANLVGG DRYEPEEENP MLGFRGASRY ISESFRDCFA LECEAVKRVR NEMGLTNVEI MIPFVRTVDE AKQVIELLKE EGLERGKDGL RVIMMCELPS NALLADQFLE HFDGFSIGSN DLTQLTLGLD RDSGIISHLF DERNDSVKAL MAMAIKAAKA KGAYVGICGQ GPSDHADFAA WLVDQGIDTV SLNPDTVIDT WLYLGKEHAQ
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