| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1869 |
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| Symbol | |
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| ID | 5611640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2252145 |
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| End bp | 2253209 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932755 |
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| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
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| Protein accession | YP_001473608 |
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| Protein GI | 157375008 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000253976 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000731788 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCATTA AAACAGATGA ACTACGCACC ACTTTATTAT GTAAGGCTAT TTCTCCCGCT
AAATTGGCTT CAGAGTTTCC GTTAACACAA GATGCAGCCG ATTACCTGGT CCAGCAAAGA
CGTGAAGTCG AAGCCATCCT TAAAGGAGAC GATCAACGAT TGTTGGTCAT CATTGGCCCT
TGTTCCATCC ATGACACCAG CGCTGCAATC GATTATGCAA AGCGTCTGGC TGTTCTGCAT
CAAGAATTAA AAGACGATCT GTGTATCTTA ATGCGCGTCT ACTTTGAAAA GCCACGTACC
ACAGTCGGCT GGAAAGGCTT GATCTCAGAT CCTGATCTCG ATGGCAGCTT CAACGCCAAT
AAAGGCTTAC GTCTGGCACG TCAGTTACTG CAAGAGATCA CCGAACTAAA ATTACCTATC
GCCACTGAAT TCTTAGATAT GGTGAACGGA CAGTATATTG CCGACCTGAT CACCTGGGGT
GCAGTGGGTG CCCGTACCAC AGAGAGTCAA ATCCATCGTG AGATGGCTTC AGCGCTCTCT
TGCCCGGTTG GCTTTAAAAA TGGTACTGAC GGCAATATCA ACATTGCCAT CGATGCCGTA
CGTGCGGCGA AAGAGCCTCA CATCTTCTAT TCACCTGATA AAGATGGCGC TATGGCGGTG
TATCGCACCA CCGGCAACCC TTACGGTCAC ATCATTCTTA GAGGTGGTAA GCAGCCTAAT
TATCATGCAG AAGATATCGA TGCCGCGGCT GAAAAGCTCG AAAGTGTCGG TGTATCTCAT
CGCATGGTGA TCGATTTCAG TCACGGTAAT AGTCAAAAGA AGCACCAGCA GCAGTTAACT
GTTGCCGACA GTATCATGAA ACAGATGAGT CATGGCTCGA CTGCTATCGC CGGTATCATG
GCCGAAAGCT TTATCGAAGA GGGCAGCCAG AAGGTGATTA CCGGAGAGGA GCTTGTCTAC
GGTAAGAGTA TTACCGATGC ATGCCTGAAC TGGAATGACT CTGAAAAACT GCTTCGCGAT
CTAGCTAAAG CCTCACGGAA AAGAATCAAT AAACTTAAAC AGTAG
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| Protein sequence | MTIKTDELRT TLLCKAISPA KLASEFPLTQ DAADYLVQQR REVEAILKGD DQRLLVIIGP
CSIHDTSAAI DYAKRLAVLH QELKDDLCIL MRVYFEKPRT TVGWKGLISD PDLDGSFNAN
KGLRLARQLL QEITELKLPI ATEFLDMVNG QYIADLITWG AVGARTTESQ IHREMASALS
CPVGFKNGTD GNINIAIDAV RAAKEPHIFY SPDKDGAMAV YRTTGNPYGH IILRGGKQPN
YHAEDIDAAA EKLESVGVSH RMVIDFSHGN SQKKHQQQLT VADSIMKQMS HGSTAIAGIM
AESFIEEGSQ KVITGEELVY GKSITDACLN WNDSEKLLRD LAKASRKRIN KLKQ
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