| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1866 |
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| Symbol | |
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| ID | 5611613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2249079 |
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| End bp | 2250368 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932752 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_001473605 |
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| Protein GI | 157375005 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.106095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00126113 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCAGAGA CACGCTGTGA TTCCTACTAT AATGCGACGA TTAATGATGA AACCCAATAT
CCTAGATTGG AAAGCGAGCT TCGAGTCGAT GTAGTTATTG TTGGTGGCGG TTTTACCGGG
GTCTCGACGG CCGTCGAATT GGCTGAACGG GGATTAAAAG TCGCCATAGT CGAAGCCAAT
AAGATTGGCT GGGGGGCGAC AGGCCGAAAC GGCGGCCAGG TAACCGGGAG TCTATCCGGT
GATGAGGCCA TGGTTAAGCA ACTTCGCAAT AAGCTTGGTA AGGAGGCGGA AAACTTTATC
TGGGATCTGC GCTGGCGGGG CCACGAGATC ATTAAAAATC GTGTCAATAA ATATAAGATC
GATTGCGATC TTAAATTTGG TCATCTGCAT ACCGCCTATA AACCTAATCA TATGCAGGAG
ATGCAGAAGA CCTATGATGA GGCTGTGCAA CGCGGAATGG GCAGTGAGTT GATGTTATTG
TCTAAACAGG ATATTCCGGA GTATTTAGAC ACCCCCCTCT ATCATGGCGG CCTGCTGAAT
AAGCGTAACA TGCACCTCCA CTCTGTGAAT CTGTGTATAG GAGAGGCCAG GGCGGCACAG
AGCCATGGGG CGATGATATT TGAAGATTCG CCGGTACTGG ATATCTGTGA TGGTGCCTTA
CCCGTGGTAA AAACAGCCCA TGGTTCAATA ACAGCCAATA GCGTATTAAT TGCGGGCAAT
GCATATCATA AGCTGGCCAG GAAGAAGCTC AGTGGTTTGC TGTTTCCTGC CTCATTAGGT
AATTGTGCAA CGGTAAAATT AACCGCCGAA GTCGCTAAGG CCATCAACCC CCACGATATT
GCAGTGTATG ACAGCCGGTT TGTGTTGGAT TACTATCGGA TGACGGCCGA TCATCGTTTA
ATGTTTGGCG GCGGGACCAA TTATTCAGGA CGAGACTCAA AGAATGTTGC TCAAGAATTG
CGTCCGGCTA TCGAGCGGAC CTTTCCACGT CTAAAGGGGA TCGATATCGA GTTTGAGTGG
ACGGGCATGG CGGGAATAGT GGTGAATCGA ATACCTCAAT TGGGTAAAGT TTCCGATAAT
GTCTTTTATT GTCAGGGGTA TTCTGGACAC GGAGTCGCAA CCTCTCACAT CATGGGAGAG
ATAATGGCGA ATGCCATTAT CGGCCAATTG ACGGAATTTG ATCTGTTTGC CGACATGAGA
CAGATAAGGT TGCCTGTCGG AGAATGGCTG GGAAATCAAG GAATGGCAAT GGGCATGCTA
TATTATCGAA TGATGGAAAA TTTCAGGTGA
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| Protein sequence | MPETRCDSYY NATINDETQY PRLESELRVD VVIVGGGFTG VSTAVELAER GLKVAIVEAN
KIGWGATGRN GGQVTGSLSG DEAMVKQLRN KLGKEAENFI WDLRWRGHEI IKNRVNKYKI
DCDLKFGHLH TAYKPNHMQE MQKTYDEAVQ RGMGSELMLL SKQDIPEYLD TPLYHGGLLN
KRNMHLHSVN LCIGEARAAQ SHGAMIFEDS PVLDICDGAL PVVKTAHGSI TANSVLIAGN
AYHKLARKKL SGLLFPASLG NCATVKLTAE VAKAINPHDI AVYDSRFVLD YYRMTADHRL
MFGGGTNYSG RDSKNVAQEL RPAIERTFPR LKGIDIEFEW TGMAGIVVNR IPQLGKVSDN
VFYCQGYSGH GVATSHIMGE IMANAIIGQL TEFDLFADMR QIRLPVGEWL GNQGMAMGML
YYRMMENFR
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