| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1860 |
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| Symbol | |
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| ID | 5612110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2239082 |
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| End bp | 2240224 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932746 |
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| Product | porin |
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| Protein accession | YP_001473599 |
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| Protein GI | 157374999 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0469133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.231412 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATG CAAACTTAAG CCTTGTAGCC GTTGCGACTA TGATGGCTGT AAGTGTGAGT
GCACAAGCTG GAGATACAGA ATTCAAATTT GGTGGATATG TAAAAACGGA TGTCATGTTC
AGTGATTACA GTAATGGCGC CCCGGACTCT GGAAATCTAT CTAGGCAGTT CTATGTTCCC
GGAACCATTT ATGGTGTCAG TGGTAACGGT GAGCAAGTTG TCGATTTTCA GGCCCGCGAG
TCACGTTTTA ACTTCAAAAC CAGCACAGAT CTTGATGGTC ATAAGTTAAG TGGGTTCATC
GAGCTTGATT TTATGACTCA TGCAGATGGT AATGAGCGTG TTTCAAATAG TTACTCTCCT
CGAATTCGTC ATGCCATTGT AAGCTTCGAT AACTGGACAG TGGGTCAGAC CTGGAGTACG
TTCCAAAACC CCGGCGCGCT TCCTGAGAAC TTAGATTTTG TCGGCGCGGC TGAAGGTACG
CCGTTTGTGC GTCAGTCTTT GGTTCGCTAT ACCAATGGTG GCTTCCAGTT TGCGGTAGAG
AACCCAGAGA CTACTGTTAC TCCATTTGAG GGCGGTTCAC GCATCACCAG TGGCAGTGGC
ATGGTTCCGG ATTTTGTTGC TCGCTATAAT TTTAAAACAG AGGGGGGCGC TAAATTCACC
GTTGCAGGTT TAGCGAGGCA GCTTAACATT GAGAAAGATA ACCTCGATAC TCAGGAGATG
GGTTATGGGG TCAGTTTTAC CGGTGTGATT CCGGTTGGTA GTGACGATAT CAAACTTTCA
GCGACAGCTG GTGACGGTAT GGGCCGCTAT ATGGCACTTA ACTATGCTAA TGCAGGTGTC
TTAGATGAAA ATGGTGATAT TCAGACCATC AGCTCCTACG GTGGCTTTGC TTCATATCGC
CATTGGTGGA ATGATAAGTG GCGTTCAAGT TTCACTGTTT CCGGCTTTAA GGCCGATAAT
GATGTCGCGT TAACTGGTGG CGCAGTGAAT GAAGAGTCCT ATTCAGGTTA TGTGAACTTA
CTCTATTCAC CGGTTAAGCC TTTGACCGTC GGTGTTGAGT ATATGTATGC AGAAAACACG
AAGCAAAACG GTGATAGCGG CGAGTTAAAC CGCGTTATTT TCTCGGTAAA ATATGTGCTT
TAA
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| Protein sequence | MKHANLSLVA VATMMAVSVS AQAGDTEFKF GGYVKTDVMF SDYSNGAPDS GNLSRQFYVP
GTIYGVSGNG EQVVDFQARE SRFNFKTSTD LDGHKLSGFI ELDFMTHADG NERVSNSYSP
RIRHAIVSFD NWTVGQTWST FQNPGALPEN LDFVGAAEGT PFVRQSLVRY TNGGFQFAVE
NPETTVTPFE GGSRITSGSG MVPDFVARYN FKTEGGAKFT VAGLARQLNI EKDNLDTQEM
GYGVSFTGVI PVGSDDIKLS ATAGDGMGRY MALNYANAGV LDENGDIQTI SSYGGFASYR
HWWNDKWRSS FTVSGFKADN DVALTGGAVN EESYSGYVNL LYSPVKPLTV GVEYMYAENT
KQNGDSGELN RVIFSVKYVL
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