| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1858 |
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| Symbol | |
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| ID | 5611714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2235078 |
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| End bp | 2235617 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932734 |
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| Product | OmpA domain-containing protein |
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| Protein accession | YP_001473597 |
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| Protein GI | 157374997 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000707454 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.993391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATCTCA ATAAGCTGTT TAAAGCGATG CTGGTTGCTC TTCCTATCAT GGCTATCAGC
GCTTGTAGTT CAACTTCTGA GTCTGAAACC GATGCGACTA GCTCAACTTC AGGTTCTGGA
AGCGAATTAT CAACGGGTAG TGGAGTAGAA ACTGGCGGTG TTGCGCCAAT ACTAACGCCA
GAAGAACAAC AGCGTTTGAA GTACCAAGAG CTACGTAAAG AGCATGTCAT CTATTTCGAT
TTCGATCGTA GTTCTGTTTC TATGCAATTT GCCGAAGTAT TACAGGCTCA TGGCAACTAC
CTGGTAGAAC ATCCTAATGT TCGCTTAATG ATTGAGGGAC ATGCCGACGA GCGTGGTACT
CCAGAGTACA ATATTGCACT TGGCGAAAGA CGTGCTAAAG CTGTGGCAAA GTACCTACAA
GGTATGGGCG TATTGCCAAG TCAGATGAGT ATCGTGAGCT ACGGTGAAGA AAAACCACTC
GATATGTCTC GTACAGACGA TGGTTTTGCC ATTAACCGTA GAGCTGTCTT AGTTTATTAA
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| Protein sequence | MDLNKLFKAM LVALPIMAIS ACSSTSESET DATSSTSGSG SELSTGSGVE TGGVAPILTP
EEQQRLKYQE LRKEHVIYFD FDRSSVSMQF AEVLQAHGNY LVEHPNVRLM IEGHADERGT
PEYNIALGER RAKAVAKYLQ GMGVLPSQMS IVSYGEEKPL DMSRTDDGFA INRRAVLVY
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