| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1847 |
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| Symbol | |
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| ID | 5611991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2223502 |
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| End bp | 2224821 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932723 |
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| Product | Na+/H+ antiporter NhaC |
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| Protein accession | YP_001473586 |
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| Protein GI | 157374986 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2056] Predicted permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000629445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCAG TTGTCATCGC TGTTTGCCTA ATGCTGGGTC TGAGTTTAGC CAGGGTAAAT
GTCGTCATAG CACTCACCAT AAGTGCGCTT GTTGCAGGTC TTGTTGGAGG CATGGATCTT
CAACAAACCG TAGATGCATT CAACACAGGC TTAGGAGGCG GAGCGCAAAT AGCATTAAGC
TATGCCCTTC TCGGTGCCTT TGCCGTTGCA CTATCTCACT CAGGACTCAC GACACTGATC
TCTAAAAAGG TCATTTCGAC ACTTGGGAAA AATCACAACT CAACCAATAT GAATCGGGTA
CGTTGGACGC TATTATTGTC CATACTCGCA ATGGCAGTTT CTTCGCAAAA CCTGCTTCCT
ATTCATATCG CATTTATTCC TATCTTGATC CCGCCCCTAC TCCATGTCAT GTCGAAGCTA
CAACTTGACC GTAGATTGGT GGCCTGTGTT CTCACCTTCG GCTTAGTGAC CACCTATATG
ATCCTACCGG TCGGCTTTGG TGGCATCTTC TTGAATGATA TTTTGTTGGC GAACCTTAAC
AGCAATAACC TTCATGCCGT GCGAGAGCAG ATCCCGACGG CAATGTTGAT CCCGGCACTT
GGAATGATCA CCGGTTTATT GATAGCGGTA TTCTTCTCAT ACCGTAAACC ACGTGAGTAT
AAAGAGGAGT TAATTTTAGC CGCCGAGCCC GAGGAAGGGG TCAATAGTCG CAATATCGCC
ATTGCAGCGG TCGCCATTGT CTCAACACTC GCAGTACAAC TGATCACCGG CTCGATGATT
TTTGGTGCCT TAATTGGTTT TATCATCTTT AGCTTCTCCG GAGCACTCAA ACATGTCGCC
GATCAGGATG TCTTTAACCA AGGTGTGAGA ATGATGGCCA ACATCGGCTT TATCATGATC
TCTGCGGCGG GCTTTGCCGC TGTGGTAAAA GAGACCGGCG ACGTGAGCAG TTTAGTCAGC
TCTTTGAGTG AAATTATTGG TGATAATAAA GCACTCGCCG CTTTCCTCAT GCTACTGGTA
GGCCTGCTTA TCACCATGGG AATTGGTTCA TCATTTTCGA CGATTCCGAT TATTGCGACC
ATCTATGTCC CGTTAGCCAT GAGTTTCGGT TTCTCGGTAA CGGCAACTAT CGCATTAGTG
GGCACCGCAG CGGCCCTTGG CGATGCAGGC TCACCGGCTT CAGATTCGAC CCTAGGGCCA
ACGGCCGGTT TAAATGCCGA TGGACAACAC GACCACATCA GAGATAGTGT GATCCCTACA
TTCATCCACT ACAACATTCC TCTGTTGGTA TTTGGTTGGA TAGCGGCCAT GGTGCTTTAG
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| Protein sequence | MNAVVIAVCL MLGLSLARVN VVIALTISAL VAGLVGGMDL QQTVDAFNTG LGGGAQIALS
YALLGAFAVA LSHSGLTTLI SKKVISTLGK NHNSTNMNRV RWTLLLSILA MAVSSQNLLP
IHIAFIPILI PPLLHVMSKL QLDRRLVACV LTFGLVTTYM ILPVGFGGIF LNDILLANLN
SNNLHAVREQ IPTAMLIPAL GMITGLLIAV FFSYRKPREY KEELILAAEP EEGVNSRNIA
IAAVAIVSTL AVQLITGSMI FGALIGFIIF SFSGALKHVA DQDVFNQGVR MMANIGFIMI
SAAGFAAVVK ETGDVSSLVS SLSEIIGDNK ALAAFLMLLV GLLITMGIGS SFSTIPIIAT
IYVPLAMSFG FSVTATIALV GTAAALGDAG SPASDSTLGP TAGLNADGQH DHIRDSVIPT
FIHYNIPLLV FGWIAAMVL
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