| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1839 |
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| Symbol | |
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| ID | 5612361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2213460 |
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| End bp | 2215169 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932715 |
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| Product | peptidase M28 |
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| Protein accession | YP_001473578 |
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| Protein GI | 157374978 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2234] Predicted aminopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTAC TGCTTCCGCT ATCGCTGCTT GCATTGCTCA GTGCATGTAG CCAACACCCT
ACACCCTCTC AAACTATCAA GTCGGAAATC GACCCACCAG TCGACACTGC AAGTGTCACT
CAGGTTAGCT TCGATGAAGT CCAATTCAGA GAAGATATTA AAACCCTCTC CTCCGACGAA
TTTGAAGGTC GTGCGCCTAC CACCCGTGGC GAGAAACTCA CGCTGGATTA CCTGACTCAG
GCCTTTAAGG CGATTGGATT AACAGGCGCC AATAAGGGTG ATTACCTGCA AGCCGTGCCT
ATGGTCAGTT ACACTGCATC GGAAGCGCAA GAGGTTAACC TCGCCGGACT GACACTCAAA
TATCGTGAAG ATGTAGTACT GGGCAGCCGC CATGATAACG GCGGTGTCGA TATTAAAGAT
GCCCCTCTGG TGTTTGTCGG TTATGGCATC TCTGCCCCCG AGTATGACTG GAATGACTAT
CAAGGTATCG ACATGACAGG CAAGATTGCC GTCATGCTGG TTAACGATCC TGGCTTTGCC
CGCCCCGATT CAGGCCTGTT TAATGGCAAG GCAATGACCT ATTACGGCCG ATGGGACTAC
AAGTATCTGG AGGCCAGCAA ACAAGGCGCC CTGGGTGCCA TCATCATTCA TGACACAGCG
CCCGCTTCCT ACCCTTGGTC TGTGGTGGAA AACAGCTGGA CCGGCGCACA GCAAGATCTT
GTGCACAGTA AAGAGAAACA GGCTGAGCGG GTTAAGGTTG AGGGTTGGAT AACCCTCGAC
GCGGCAACTC TGCTGTTCGA TAGATCCGGC ATCTCTTTAG AAAACCTCAG CGACCGTGCG
GCAAACAGTC CAATCAACCT GCCGCTTAAG CAGAGTGCCG ACATTCAGTT TGCCAATACA
GCTGAGTACG CCAACAGCTA CAATGTTGTA GCTACCCTCC CCGGTGCTAA GGCCACAGAC
GAGCATATTT TGTTTACCGC TCACTGGGAT CATATCGGCG TAGATGAAAA TAGAACTGAC
GATAAAATCT ATAATGGTGC ACTCGATAAT GCCTCTGGTA CCGCAGGCAT TATGGCCATC
GCCCGCCAGT TTGTTCACCA GGCTAAGGCG GGGAATCCAG CAAAGCGTTC GCTCACTTTC
ATTGCAACAA CAGGTGAAGA GCAAGGGTTG CTGGGGTCTC GCTATTACGC GGCCAACCCC
ATCTACCCCA TAGATAAGTC GGTGGCCGTA TTTAATCTCG ACAGTACTAA CATTTATGGC
AGAACCAGTG ACTACACAAT AGTTGGCAAA GGGAAATCTG AGTTAGAGCA ATACCTTATC
GAAGCACTGG TACCTCAAAA TAGAGTGGCA ACATCAGAAA GTCGCCCTGA ATCGGGTGGT
TTTTTCCGCT CAGATCATTT CAGCTTCGCT CAAAAAGGCG TACCCGCAGT GTTTGCTGGG
GGAGGCAGCC AACCTGTCGA TGAGTCCACC AGAGCGTATA AAGCCAGAAT GAAAGAGATA
ATGAAAGGGT GTTACCACAG CACCTGTGAT GAATACCGTG ATGATTGGGA CCTTAGCGGT
GCTCTGGAAG ATATCGCCGT CTATTATCAT GCCGCCGATT CGCTCGCCAA CAGTTCTGAT
TGGCCCGGTT ATTATCAGGG AACCGAGTTT CACTCTTTAC GCGCGGCCAA ATCTACTGAG
AGCGAAGTGA CTGCAAAATT AGAGGACTGA
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| Protein sequence | MRLLLPLSLL ALLSACSQHP TPSQTIKSEI DPPVDTASVT QVSFDEVQFR EDIKTLSSDE
FEGRAPTTRG EKLTLDYLTQ AFKAIGLTGA NKGDYLQAVP MVSYTASEAQ EVNLAGLTLK
YREDVVLGSR HDNGGVDIKD APLVFVGYGI SAPEYDWNDY QGIDMTGKIA VMLVNDPGFA
RPDSGLFNGK AMTYYGRWDY KYLEASKQGA LGAIIIHDTA PASYPWSVVE NSWTGAQQDL
VHSKEKQAER VKVEGWITLD AATLLFDRSG ISLENLSDRA ANSPINLPLK QSADIQFANT
AEYANSYNVV ATLPGAKATD EHILFTAHWD HIGVDENRTD DKIYNGALDN ASGTAGIMAI
ARQFVHQAKA GNPAKRSLTF IATTGEEQGL LGSRYYAANP IYPIDKSVAV FNLDSTNIYG
RTSDYTIVGK GKSELEQYLI EALVPQNRVA TSESRPESGG FFRSDHFSFA QKGVPAVFAG
GGSQPVDEST RAYKARMKEI MKGCYHSTCD EYRDDWDLSG ALEDIAVYYH AADSLANSSD
WPGYYQGTEF HSLRAAKSTE SEVTAKLED
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