| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1822 |
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| Symbol | |
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| ID | 5612541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2198117 |
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| End bp | 2199634 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932698 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001473561 |
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| Protein GI | 157374961 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTCG CTAAATTTGT TCAAGGTTCG ATAATGCGTC ACATATTGGT GATGAGCTCC
ACGGCCGCAG TCGGGATCTC GGCGCTTTTT GTGGTCGACT TAATCGATAT CTTTTTTCTT
AGTCTGCTCG GCGAGCAAGA GTTAGCCGCA GCCGTCGGTT ACGCCGGAAC CATCTCATTT
TTTACGACAT CTATCGGCAT CGGTCTGTCC ATCGCTCTGG GTGCATTAGT CTCCCGCGCA
ATCGGGGCGA AGCAGTTAGA TATGGCCAAG AGGCTACTGC TCAATAGTGC GGTGGTGACT
CTGCTCATGA GCTTATGTGT ATCTGCTGTC ATGACCTACT TTATTCCTGA GGTGCTTACC
TTAGTCGGCG CGACTGGCCA TACGGCTGAG CTGGCCGCCA GTTATCTCTA TATCCTGGTG
CCGTCTCTTC CTATCATCTG TCTGGCGATG GCGTTAGGTG CAGCGTTGAG AGCCGTAGGT
GATGCTAAGC TGTCTATGAT GTCGACCTTA GCCGGTGGTG GCGTTAACTT AGTTTTTGAC
CCGATATTTA TCTTTGCACT GGGAATGGGA ATAGAGGGGG CCGCGGTTGC CTCGGTACTG
GCTCGTACTG CAGTTCTCGT CATCGCAGCT CGTGGCGTCA TCAAAAAGCA TAAACTCTTC
GGAGAGTTTG AACTCGATAG CTTTAAGGCC GATTTAAGGC CGATATTTGC CATTGCAGGC
CCCGCTATGT TGACTAATGT GGCGACACCT ATAGGCAATG CCGTTGTAAC CAGGGCAATC
GCCGACTTTG GTGATGGGTA TGTGGCTGGC TGGGCAGTGT TAGGACGTTT AATTCCCGTT
TCATTCGGAA TGATATTTGC GCTGTCCGGT GCGATTGGCC CCATTGTGGG TCAAAATTTT
GGTGCCCATG AATTTAGCCG GGTAAGAGAG AGCCTCACTA AGGCACTGCA GTTTTGCATC
TTATATGTCA TCGGCGTCTC TCTGATTTTG ATGCTGTTAC AAGAGCAGAT TGTCTCCATA
TTCGATATGC AGGGAGATGG CGCCGACATC ATTCGTTTTT TCTGTAGTTA TATCGCCGTA
TTTTTTATCT TTTCCGGGGC GCTCTTCGTG GCGAATGCTT CATTTAACAA CTTAGGTAAA
CCTAAATACT CTACCTTCTT TAATGTGGGT AAAGCCACGA TCGGCACCAT ACCATTTGTC
TATTTCGGAG CTAAGTGGGC TGGTGTATAT GGTGTGTTGA TAGGGCAAGT TATCGGGTCT
ATCATTTTTG CTGTTTTTGG GGTGTTAGCA GCCTTCAGGC TAATCGAAAA AGTTAAACAA
ACGTCTTTAC AGTATGGAGA TGCGGAGCCA GTGAATAAAG CCGATGAGGA TTTACTGGAA
GGCGAGCTTA TTCCAAGTAG CCCTAACCCA TTGTCCTCTT CCTGTGCTCA GATGGCTCAG
ATAACGGAGG AGCAGGATTG TGAAGCCAGT AATGAACTGA CTAAGTCATT GAAGGCTACA
GACAGCAGGG CCGGTTAA
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| Protein sequence | MTVAKFVQGS IMRHILVMSS TAAVGISALF VVDLIDIFFL SLLGEQELAA AVGYAGTISF
FTTSIGIGLS IALGALVSRA IGAKQLDMAK RLLLNSAVVT LLMSLCVSAV MTYFIPEVLT
LVGATGHTAE LAASYLYILV PSLPIICLAM ALGAALRAVG DAKLSMMSTL AGGGVNLVFD
PIFIFALGMG IEGAAVASVL ARTAVLVIAA RGVIKKHKLF GEFELDSFKA DLRPIFAIAG
PAMLTNVATP IGNAVVTRAI ADFGDGYVAG WAVLGRLIPV SFGMIFALSG AIGPIVGQNF
GAHEFSRVRE SLTKALQFCI LYVIGVSLIL MLLQEQIVSI FDMQGDGADI IRFFCSYIAV
FFIFSGALFV ANASFNNLGK PKYSTFFNVG KATIGTIPFV YFGAKWAGVY GVLIGQVIGS
IIFAVFGVLA AFRLIEKVKQ TSLQYGDAEP VNKADEDLLE GELIPSSPNP LSSSCAQMAQ
ITEEQDCEAS NELTKSLKAT DSRAG
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