Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1818 |
Symbol | |
ID | 5612481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2193754 |
End bp | 2194947 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640932694 |
Product | lysine 2,3-aminomutase |
Protein accession | YP_001473557 |
Protein GI | 157374957 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1509] Lysine 2,3-aminomutase |
TIGRFAM ID | [TIGR00238] KamA family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTCAGG CATCCATACA AGTTAAGCAG TACACCCCGC AGATCCCCCT TAAGCTGGTC AAAAATAATA AAGAAGATAA GTTTGCTGAC TACCAGTCAC TGATGGACTT TGATGTTGCC AGCCGTCCCT GGCGGGAAAC ATTGGCTCAC TCCTTTAAAA CGGACAAGGA GCTCTCCAAA GTATTCGGTA ATATCAATCC GGTCGAAGAG GACGTTTATA AGGTCATCGC CACCCGTATT ACGCCCTATA TTGCTCAGTT GATGGACAAG GACGATCAGG CATGCCCAAT CCGCATTCAA TACGTTCCTG AGCAAAATGA AATGGATGTA GCACCACAAG AGATGGGGGA TCAGCTGGCT GAAGATGACA TGATGCCTGA TGGAACCTCT ATCGTTCACC GCTATCCTAA CCGCGTGCTC TTTCTGGTAC ACAATATTTG TGGCGCCTAT TGTCGCCACT GTACCCGAAA GCGCATGGTG TCAGATCCCC TGAATGTTAT CTCTATGGAG CGGATCCGCA AATCTGTGGA ATACCTACGT GAACACCCGG AAGTACAGGA TGTGCTGCTC TCTGGCGGTG ATCCATTGTT GCTGACTGAT GACAAGCTAG ACCAGGTGTT GTCCATGATC CGTGAAGCAA GGCCTGATCT GAAAATATTG CGTATCGGCA GCCGCTTACC AACTCAGTTG CCTACACGTA TTACGCCAGA GCTGTGTCAG ATACTGGTTA AAAACCGCGT CACCCTGCTC AATACCCAAG TTAATCATCC CAAAGAGATC ACTCCATTGT TTGTGAAGCA TATGGCAATG CTGCGCACCA GCGGCATTAT GCTTGGTAAC CAAAGCGTGT TGATCAAGGG AGTTAACGAC AGCGTTGAAG TGATGCGCGA TCTGGTCATG GATCTGGTCT CCAATGGTAT TCGTCCTTAC TATGTTTACT CCATGGATCC CGCTCCCGGT AACAGCAAGT TTCAGGTCAG CTACGACCGT ATGCTGGAGA TCTACCATGG CATCCGGGGT TGGGTATCGG GGCCTGCCAT TCCAACCTTT ATCGTCGATG GCATTGGTGG TCTGGGTAAA ATGCCGGTAC AGCCGGAATA CGTGCGCAAA CAAGTGATCG ATGGCGAAAC TAAACTCTTA GCTACCAACT TTGAAGGGCG AAACGCCGAC ATGTCTTTCC TGCTGGGTGA GTAA
|
Protein sequence | MSQASIQVKQ YTPQIPLKLV KNNKEDKFAD YQSLMDFDVA SRPWRETLAH SFKTDKELSK VFGNINPVEE DVYKVIATRI TPYIAQLMDK DDQACPIRIQ YVPEQNEMDV APQEMGDQLA EDDMMPDGTS IVHRYPNRVL FLVHNICGAY CRHCTRKRMV SDPLNVISME RIRKSVEYLR EHPEVQDVLL SGGDPLLLTD DKLDQVLSMI REARPDLKIL RIGSRLPTQL PTRITPELCQ ILVKNRVTLL NTQVNHPKEI TPLFVKHMAM LRTSGIMLGN QSVLIKGVND SVEVMRDLVM DLVSNGIRPY YVYSMDPAPG NSKFQVSYDR MLEIYHGIRG WVSGPAIPTF IVDGIGGLGK MPVQPEYVRK QVIDGETKLL ATNFEGRNAD MSFLLGE
|
| |