| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1817 |
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| Symbol | |
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| ID | 5612480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2192297 |
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| End bp | 2193751 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640932693 |
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| Product | SSS family solute/sodium (Na+) symporter |
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| Protein accession | YP_001473556 |
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| Protein GI | 157374956 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTATT TTGACTATGC AATTTTTGCC TGCTATTTGA TTGGACTGTT AGCGTTTGGT
TACTACCATT TTCGTCGTCA CCAAAGCGGT GAAGATTATT ATCTCGGTGG GCGAAATATT
AAAGCCAGGC ACGTGGGGTT CTCCATCGCT GCAACGGATG TTGGTGGAGG CTTCTCCATC
GGACTCGCCG GGCTAGGTTT CAGTATGGGT CTTTCAGGCG CCTGGCTGCT ATTTACCGGT
TTGCTGGGAG CCTGGCTCTC AGCCGTGTGG TTGCTCCCCA GAGTTAAGTT TTTGGAAGGG
AAACACGGAC TGTCGACCTA CCCGGAACTG CTCAAGATTA GATTTGGCAC CAAAGTCGCC
ATGCTGGCGG CGATGATTTC CTGTATTGGT TATCTGGGAT TCACCGGTGC GCAGATGCTG
GCGGGGGCTA AGTTAGCTGC GGCAACCTTA CTGACCGAAC CGGCATTGGG TATATCCAAC
CTGCAACTCA TGCTCTGGGT TATAGGCGGC GTGACCATTT TGTACACCGT ATTTGGCGGC
TTGAAGGCGG TGATCTACAC CGACAGTGTG CAATGGCTCA TTCTCCTTGC AGGCATGTCG
TTGTTTGCTT TGCCCTATGC ACTCGATGCA GTAGGTGGCT GGCAGGGGCT GATGGACTCC
TTGCCTGCAA GCTACTTCTC ATTAACGGCA ATCTCTCCGG TTTTAGCCAT AAACTGGTTA
CTGACCATTA CCCCGATCTG GCTGATTGCC ATGACACTGT ATCAACGCAT GTTTGCCTGT
AGAGATACGC AAACGGCTAA GCGCGCCTGG TACCTTGCAG GCTTTCTGGA ATTCCCCCTG
ATGGCTGTTA GCGGTGTCAT CCTGGGGATG TGTGCCAGAG TGCTGCTGCC CGATATGGAG
CCGGAGATGG CAGTGCCTGC GATGATCCGG GATCTGTTGC CCATCGGCAT CACAGGGATC
ATAATTGCAG CCTACTTCTC TGCCATTATG TCGACTGCAG ACAGCTGTCT TATGGCCGCT
TCGGCTAACC TGACGCAAGA CGTACTCAAA ATTCCAGCCA GTCATTCCAG GACGGTTCGC
ATCTCAATGA TTGCCACCGC ACTGTTGGGG CTCGCCGCTA TCTTGTTGGC GAGTCAGGCT
AATCAGGTGC TGGATGCCAT TCTGTATGCC TACGGCTTTA TGGTTTCCGG TCTGGTATTC
CCCACCCTGG CCGCACTGTT CTGGCCTAAG GTAGGAGCCG GCACGGCGTT GGCCTCAATG
TTGAGTGGTG GGCTGTGCGC CATCGCCCTG ATGACCGGCC TGTTGCCACT ACCCGAGATC
CTTACTGCCT TAGGGCTGGA TGTGAGCATT TATGGTCTGG CTCTGTCGGC TCTGATCATG
CTTATAGGCT ACAAAATTTC ACCCGAACTA ACGGCCGATG TACAAGATGT GGAGGCCAAT
TATGAACGAA ATTAA
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| Protein sequence | MHYFDYAIFA CYLIGLLAFG YYHFRRHQSG EDYYLGGRNI KARHVGFSIA ATDVGGGFSI
GLAGLGFSMG LSGAWLLFTG LLGAWLSAVW LLPRVKFLEG KHGLSTYPEL LKIRFGTKVA
MLAAMISCIG YLGFTGAQML AGAKLAAATL LTEPALGISN LQLMLWVIGG VTILYTVFGG
LKAVIYTDSV QWLILLAGMS LFALPYALDA VGGWQGLMDS LPASYFSLTA ISPVLAINWL
LTITPIWLIA MTLYQRMFAC RDTQTAKRAW YLAGFLEFPL MAVSGVILGM CARVLLPDME
PEMAVPAMIR DLLPIGITGI IIAAYFSAIM STADSCLMAA SANLTQDVLK IPASHSRTVR
ISMIATALLG LAAILLASQA NQVLDAILYA YGFMVSGLVF PTLAALFWPK VGAGTALASM
LSGGLCAIAL MTGLLPLPEI LTALGLDVSI YGLALSALIM LIGYKISPEL TADVQDVEAN
YERN
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