| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1811 |
|---|
| Symbol | |
|---|
| ID | 5612565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2183497 |
|---|
| End bp | 2184378 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932687 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473550 |
|---|
| Protein GI | 157374950 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0258345 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTTT TTGTCAGAGA TTTAACCGTA ATCGATTTTT CATACTTATG CCCGATACGC
GGTATGGTGG GCGAAAGCTG GACTGTCGAT GTGCTCCTCG ATGGTGGCTT AGATGAGCAA
AATATGGTTT TGGACTTTTC TAAAGTGAAG CGCACCATAA AAGATACTAT CGATGATATC
GCCGATCATC GATTACTCAT TCCTACCGCA TACAGTGAAG TCCGCTGGCA GCAGCAGGGT
GATCGGGTAT GGATGGATTT TAACAGCTTA CAAGGTGACA TTCACTTAGC CTGCCCTCAA
CAAGCCTTCG CCTTAATACC GAGTGAAATT ATCGATTTCG ATAGTGTGAA CACCTTCCTG
CAGAAGGCGT TAAAGGAAGC CCTGCCCGAC AATGTCGATG GTATTGCCCT GACATTGAGA
AATGAGATAC ATGATGCCCC CTATTATCAC TACTCTCACG GTTTGCGAAA GCATGATGGA
AACTGCCAAC GCATAGCCCA TGGTCATAGA AGCCCGGTAA ATGTGTTTGA AAATGGCATG
GCTGCTCCTA AATGGGATGA GTATTGGGCT GAGCGTTGGA AAGATATCTA CTTAGGCAGC
GAAGAGGATG TGGTTAGCGT CGGTGAGTTG ACTCTCTCAC CTCAGGCTAA AGTGTCCGAT
AAAACTCATT TTGGATTCCA TTATCAGGCG CCACAGGGAG ACTTTCAGTT GGCCATGCCT
AAGACGCGTT GTGAGATCAT CCCACACGAT ACAACGGTCG AGCTATTGGC AGAGTTTATG
GCAAGCACCT TAGTAGAAAA GTCTCCCCAG AGTGAGTTTA AGGTGATCGC TTATGAAGGT
ATCGGCAAAG GCGCGATATC GGTAAAGGGC AATAAAGCCT GA
|
|---|
| Protein sequence | MQLFVRDLTV IDFSYLCPIR GMVGESWTVD VLLDGGLDEQ NMVLDFSKVK RTIKDTIDDI
ADHRLLIPTA YSEVRWQQQG DRVWMDFNSL QGDIHLACPQ QAFALIPSEI IDFDSVNTFL
QKALKEALPD NVDGIALTLR NEIHDAPYYH YSHGLRKHDG NCQRIAHGHR SPVNVFENGM
AAPKWDEYWA ERWKDIYLGS EEDVVSVGEL TLSPQAKVSD KTHFGFHYQA PQGDFQLAMP
KTRCEIIPHD TTVELLAEFM ASTLVEKSPQ SEFKVIAYEG IGKGAISVKG NKA
|
|---|
| |